BAC Information

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BAC

Clone NameMSMg01-152O24
Chromosome15 (Build37)
Map Location 6,111,846 - 6,112,267
singlet/doubletsinglet
Overlap genenone
Upstream genePrkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308, LOC666291, LOC666319, LOC100039358, LOC666323
Downstream geneDab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511, 4921505C17Rik, Osmr, Lifr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152O24.T7 (MSMg01no152_o24.b1)MSMg01-152O24.TJ (MSMg01no152_o24.g1)
ACCAG354674AG354675
length7211,167
length of high quality
(start - end)
422 (72 - 493)---
definitionCHROMAT_FILE: MSMg01no152_o24.b1 PHD_FILE: MSMg01no152_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:11 2005CHROMAT_FILE: MSMg01no152_o24.g1 PHD_FILE: MSMg01no152_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGG
AATTCTCTGGCTTATTTCTAAAAGACTCTAGTCCTTCAGTTCCTTGCATA
TTATCCATTAAAACTTGAAGTTTTAAAAAGGGACCTGTCACGGCAAAATT
TTTTCTCGATTTTTTTCTTTTGGGAGTTATAATGGCTTTCTTTGGTATCA
GTTTTCACATTCTCCAAGTGTACTACAATGTGAGCTGTCACCATGGAAAC
CTACTCTGTAATGGTAAATATGATGTTATTATCTTAACAACATAGGTAAG
ACTTTTACCCTTTCCTAGCATCTCTCTGATGGAATTATTTGGAAGTCATA
TAGGAGCTAGTTAATACTTAGGACATCTCTGGAAACAGAGGGGTACTGTG
TATTTTCTGAGATGAAGCCCTATAGAAACTACTTTATGCTTAGACAGAAA
GTCCCTGAAAACAGAGGGTTATTACTGGTGTATTATCTGGGATGACCCCT
GAACAGCAGAGGATAGATCAAGAGAGACAGTGACTAAGCAGCCACCAGAC
CCCATCAGAGGATCTAGGAGTTCCACTTGCACTAGTTGTGTTAGACCAGG
CTAGGGCTTTCCGCCTGCCATGCGATCCACTACCATTCATACACTTTTGT
TATTGAGTGTTGGCGCCTAAACCGACTATNTCTATGTGTGAGCTATATTT
CATGTTCAATATCCAAGATAA
GAGACGGAGTNAGAACGCGTGATCGAAAAGGGGGCGCCCTCGAGTATCGG
CGGCGCTTATAATTAATTTCGCGCGACGAGAAAACGAAACAGTAGACGAC
AGACGGCGCGCCCATATCCGGGTTTCATAACCGCGGACAGGCGGCGAGAA
AGGTAGCGCTTTTTTATGCACGAATGTACGAAGTCGGATCGGAAAACCCG
GAAAAGAATGAGAGACCGAAAGAAAATAGCGAGAGGCCTCTTGCGTTCGT
AATCACTAATCCGCGATAAGGGGAGATGGAGAAAACGAGGACGAAGAAAC
GTGGAAGGAGATAAGTTTCACACAGGGAAAAAGAGGGCGGGCGCGGTTAA
ACGCAATGGTGCGGAGGGGGGGGGCAGGTGGGGTGCCCCATCTAGACGTG
GTCCGTGACCGAAGTACTGCGGTGGAGTGGCACTCGCGACTCACATTCAC
ACCGCACTATATGCCCGGCCCACAATCGCGAGTTGAGTTTTTGACTTTGG
AGTGTGATATGTTGGTGCGCGAAAAATGTATTTGTGGGGGGGGGGAACGG
GCGGGATGGTAATGCTATGGCGAGCACGGCCGCGATTGTTCAAGTGCGGG
CGTAATGGCAGTGCCGGGATGTAAGAGAGCAGGGTGGCCGAGTAACATAG
CCGGGAGAGGTCGCGGATAACGTTACATGAACNATTAAAGCCTGTTAGAC
AAGTAACAAGATAACACAAGCGCAGAATACGAGATGGACAACAATAGAAT
ATATTATGGGGGTAGAGAAGTAGAATCCAGCCTCGTGACGAACCATGCAG
AGCAACGCACACGATCGCTTGGACCGATGGTGGAACTACGCCGACGATAA
ACACCGGAGATGATATATAGCGAAAACAGGCGGCGCGATTATACGCAGAG
CGGGGCGACACAGGAAGAAGAAAATCGGGGCCAACAGGATACGAGGTGGT
ATTAATTGCGAACGACNAGTTTTGTTATACCCGTTACCGCCGCGCGCGAC
GTATTTCACCCCACTTTCTCCCGGGTCGGCAACTTTCATACTACACGTTA
GTATACAACCGCCGCCTGTTGTGTCGGACACGTCTACATCTCACTGTTGG
TGCAGGGAATATGAGGCACACGAGCGGGGAACGATATAAAACGCGGGATG
CCTAAACGTACAACGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_o24.b1 MSMg01no152_o24.b1 CHROMAT_FILE:
MSMg01no152_o24.b1 PHD_FILE: MSMg01no152_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:11 2005
         (422 letters)



>mm_chr15_6111646_6112467
          Length = 822

 Score =  770 bits (398), Expect = 0.0
 Identities = 416/422 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagactctagtccttcagttccttgcatattatccattaaaacttgaagttttaaaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagactctagtccttcagttccttgcatattatccattaaaacttgaagttttaaaaagg 260

                                                                       
Query: 61  gacctgtcacggcaaaattttttctcgatttttttcttttgggagttataatggctttct 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 gacctgtcacggcaaaattttttctcaatttttttcttttgggagttataatggctttct 320

                                                                       
Query: 121 ttggtatcagttttcacattctccaagtgtactacaatgtgagctgtcaccatggaaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggtatcagttttcacattctccaagtgtactacaatgtgagctgtcaccatggaaacc 380

                                                                       
Query: 181 tactctgtaatggtaaatatgatgttattatcttaacaacataggtaagacttttaccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactctgtaatggtaaatatgatgttattatcttaacaacataggtaagacttttaccct 440

                                                                       
Query: 241 ttcctagcatctctctgatggaattatttggaagtcatataggagctagttaatacttag 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 ttcctagcatctctctgatggaattacttggaagtcatataggagctagttaatacttag 500

                                                                       
Query: 301 gacatctctggaaacagaggggtactgtgtattttctgagatgaagccctatagaaacta 360
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 aacatctctggaaacagaggggtactgtgtattttcggagatgaagccctatagaaacta 560

                                                                       
Query: 361 ctttatgcttagacagaaagtccctgaaaacagagggttattactggtgtattatctggg 420
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 561 ctttatgcttagacagaaagtccctgaaaacagagggctattattggtgtattatctggg 620

             
Query: 421 at 422
           ||
Sbjct: 621 at 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)