BAC Information

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BAC

Clone NameMSMg01-152P02
Chromosome15 (Build37)
Map Location 91,002,303 - 91,002,782
singlet/doubletsinglet
Overlap geneAbcd2
Upstream geneAlg10b, Cpne8, EG627342, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a, EG635871
Downstream geneLOC545126, Slc2a13, Lrrk2, Muc19, Smgc, LOC100042529, Cntn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152P02.T7 (MSMg01no152_p02.b1)MSMg01-152P02.TJ (MSMg01no152_p02.g1)
ACCAG354678AG354679
length728726
length of high quality
(start - end)
488 (49 - 536)516 (76 - 591)
definitionCHROMAT_FILE: MSMg01no152_p02.b1 PHD_FILE: MSMg01no152_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:11 2005CHROMAT_FILE: MSMg01no152_p02.g1 PHD_FILE: MSMg01no152_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTGAGAAATTCCGAAATCTCCCCAGCACTTCCCCAGTTGGTG
TCTTCTAATGCTTTAGCAATGTTAATAATAAGAACCAGATCTTTAGAAAT
CTGAGCTGTCGTACAAGAATACAGAGTTGTTCTGTATAAATTGAGTTCAA
GTCATTTCCCCTCCCCCCGTCTCTTCCGGGACAGAAGAGAGAAGCTGGAA
CATCTGTAGGATTGAAGACAGAATGTTTCCGCTCAAATGTACATTAGGCA
GTATCCTTCTGTAGGATGGTGAGTGGTAGGATGTGGGGGCTTTGCTCAAA
TAGAACCTATTCTGGCATTTCCAAGAGTCTGAAGGTCCTGTGCAGTGTCA
CTTGCACTGCTTAATCAGGTGGCTGATGCCCTTCACCCCCTGCTGGATCA
GCTCTGACTCACTAGAAGCATCTTCCTCTTGGGTATGTCCTGAATCATCC
TGTCCACTCTTGGCGTATTTTCTCTTCTTCCCAGGCCTCTGAGGATAAGC
TTATGACCGTCTGTTCTTGCTTTCATTCCTCAACTAATCTATAGCCCATT
ACTCCCTCACGCATGCCTTGGTGAGTTTCTGTCTGCCTGCTGCTGCCACA
GCCCCCAAAGCCATAGCTATGTGTGTTTGTTGAGCTTCCTCACTAGCCAA
TTCTCACAACGCATCTATCAGCTCCCCC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTCTCACATATGTATTCCATTTT
TACTGGTTACTTGTTTTCTTGAAGTTATATTTCAGTTCTTTGTATAGTCT
AGATGTTAATCCTCCAATGGTCGTACAGGTAGCAAAGATTCTTCTCACAT
CCCGTAAGCTGCTTCTTCACTTAATTTACTATTGCTGCCGGACAGTGGTG
ATGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCT
GAGTTTGAGGCCAGCCTGGTCTACAAGGTGAGTTCCAGGACAGCCAGGGC
TACACAGAGAAACCCTGTCTCGGAAAAAAACCAAAACAAAACAAAATGTA
CTATTGCCGTCGCTGTGCAGACACTTTGTAATTTCTTGAGATCCCGCCTG
TCAGTTGTCGCCTTATTTCCCGAGTAAGTAGAGTCCCATTTAGTCTTGCC
TCGTGTCTACAAGTTGTAGTCTATTTCCTGCTTTTTCCTATAGCAGCTTT
AGAGTTTATGATTTTAAATGCGGTTTCTTTTTTCATTCAGTTGATTTTTG
CGTAGGGTAAGAACTAAATATCTAGTTTCCTTCTTGGACATGTAGACACC
CAGTTTTTCCAACACCTATTGCCTGAAGATGCTTCTCTTTGTTTCTGCGA
GTATTTTTGGCATCTTTATAAATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_p02.b1 MSMg01no152_p02.b1 CHROMAT_FILE:
MSMg01no152_p02.b1 PHD_FILE: MSMg01no152_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:11 2005
         (488 letters)



>mm_chr15_91002099_91002982
          Length = 884

 Score =  816 bits (422), Expect = 0.0
 Identities = 467/484 (96%), Gaps = 4/484 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgagaaattccgaaatctccccagcacttccccagttggtgtcttctaatgct 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaattcctgagaaattgtgaaatctccccagcacttccccagttggtgtcttctaatgct 625

                                                                       
Query: 65  ttagcaatgttaataataagaaccagatctttagaaatctgagctgtcgtacaagaatac 124
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 624 ttagcaatgttaataataagaaccagatctttagaaatctgagccgtcgtacaagaatac 565

                                                                       
Query: 125 agagttgttctgtataaattgagttcaagtcatttcccctccccccgtctcttccgggac 184
           |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 564 agagttgttctgtataaattgagttcaaatcatttcccctcgccccgtctcttccgggac 505

                                                                       
Query: 185 agaagagagaagctggaacatctgtaggattgaagacagaatgtttccgctcaaatgtac 244
           ||    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 504 ag----gagaagctggaacatctgtaggattgaagacagaacgtttccgctcaaatgtac 449

                                                                       
Query: 245 attaggcagtatccttctgtaggatggtgagtggtaggatgtgggggctttgctcaaata 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 448 attaggcagtatccttctgtaggatggtgagtgggaggatgtgggggctttgctcaaata 389

                                                                       
Query: 305 gaacctattctggcatttccaagagtctgaaggtcctgtgcagtgtcacttgcactgctt 364
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 388 gaacctattctggcatttccaagagtctgaaggtcctgtgcaatgtcacttgcactgctt 329

                                                                       
Query: 365 aatcaggtggctgatgcccttcaccccctgctggatcagctctgactcactagaagcatc 424
           |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 328 aatcaggtggctgatgcccttcaccccctgctgggtcagttctgactcactagaagcatc 269

                                                                       
Query: 425 ttcctcttgggtatgtcctgaatcatcctgtccactcttggcgtattttctcttcttccc 484
           |||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 268 ttccacttgggtatgtcctgaatcatcctgtcaactcttggtgtattttctcttcttccc 209

               
Query: 485 aggc 488
           ||||
Sbjct: 208 aggc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 884
Length adjustment: 10
Effective length of query: 478
Effective length of database: 874
Effective search space:   417772
Effective search space used:   417772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)