BAC Information

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BAC

Clone NameMSMg01-153G04
Chromosome15 (Build37)
Map Location 32,038,343 - 32,199,639
singlet/doubletdoublet
Overlap geneTas2r119, 0610007N19Rik, Sema5a
Upstream geneDap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231
Downstream geneLOC100040962, Sdc2, Pgcp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153G04.T7 (MSMg01no153_g04.b1)MSMg01-153G04.TJ (MSMg01no153_g04.g1)
ACCAG355000AG355001
length684706
length of high quality
(start - end)
639 (43 - 681)396 (69 - 464)
definitionCHROMAT_FILE: MSMg01no153_g04.b1 PHD_FILE: MSMg01no153_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:45 2005CHROMAT_FILE: MSMg01no153_g04.g1 PHD_FILE: MSMg01no153_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,038,343 - 32,038,979)(32,199,244 - 32,199,639)
sequence
TCATAATTTGCGGCGCTAAACGACTCCTATATCGAGAGAATCCGCGGAAT
TCTTCCAGTTCCTCCAGTGTGACTATACTGAGGTGAGTAGGGGCCACTTC
AGTCTAGTGTGAATACACTGAGGTAACTGAGGACTTGCATTTGCCTTCTT
TTTAAAAATACTTTTTTATTCTATGTATAGAAGTCTTTGCCTGTATGTGT
GTCTATGCACCATAGTGCCTAGAAAGGCCAGATGAGGGCATCAGGTGCCC
TGGAGCTGGAGCTACAGGTAGCTATGATTGCCATGCTGGAAACCAAACCT
ATGTCTTCTGCAGGAACACCAAGTGCTCTCAACCACTGAGCTGTCTCTCT
GACCCTTGGCTCACTTTTTATGCCAAATCTCCTCAACTGTGAGCACATCA
TTGTGGCACATCATTTCCCAAATGCAGTCAGGCACTGTAGAACACATATG
ATGGTGGTCCTGGAAGGTTTTTAATAAAGATGAAGCATTTTTCCCCCTGG
TGAAATGACAACTGTCTCAGTGTCATAGTGAAAGCCATCACTTATTGGTG
ATGCCTCATGAATACAACTGTGATACTGGTCTAAAAATTGTGATGCCTAT
AGTATGAAAGTACAAGAATATAAGTACATAGAGGCGTCATACTTAATGAA
GGTCACAAGCAACTCTGGAATTACTGTATTACAT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCAGAAATTCCAGAACAGCCTCCAACACCAAAAGCTAGGCATG
AGGGGTGGGGTGGGCTGGGCTGGGGGCTGGGAGGTGAGGATTTCAGAGTG
AACTCCTAAAGAAAGCAAAGAGCAACACCTTGATTTTGAACTTCTGACAT
CCAAAACTGAGAGAACTGATCACTGCTGCTTTCAAAGGATTCCAAATGTG
GAGTGATTTGTTCAGTAGCCTAGGGAAAGAAACACAAATGTTACAGATAG
CCATATAAAATAACCAAAAAGTTTTGGTCAGACTAAAAGAAATTTTCATG
TTCTCAACTATTATCAATACAGTTACAAACAAATAAACATGAACATTTTG
TCAGCTACATGCTAAGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTTGCTCCCCCCCTCCCTTTCCTATTTTCTCATCTAACCAT
TTCCTCTCCTTTTTACCTCTGTCCCCCTCTTTACATATTCTGCTTTTTTT
ATTCCCCATCCCCTCCTCTTCCTCCTTTTTTTTCCGCCCCGTTTCTTTTC
CTATTTTCCTCCTTTTCTTTTCCATCTCTTTCCTCCTCTTTTGACCTTTA
AATACCCCTCCTATATCCACCCCCCCTCCTAATGTACCTTCTCCCTCTCC
TCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_g04.b1 MSMg01no153_g04.b1 CHROMAT_FILE:
MSMg01no153_g04.b1 PHD_FILE: MSMg01no153_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:45 2005
         (639 letters)



>mm_chr15_32038141_32039179
          Length = 1039

 Score = 1201 bits (621), Expect = 0.0
 Identities = 633/637 (99%), Gaps = 1/637 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttccagttcc-tccagtgtgactatactgaggtgagtaggggccacttcagtc 62
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcttccagttcagtccagtgtgactatactgaggtgagtaggggccacttcagtc 262

                                                                       
Query: 63  tagtgtgaatacactgaggtaactgaggacttgcatttgccttctttttaaaaatacttt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tagtgtgaatacactgaggtaactgaggacttgcatttgccttctttttaaaaatacttt 322

                                                                       
Query: 123 tttattctatgtatagaagtctttgcctgtatgtgtgtctatgcaccatagtgcctagaa 182
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tttattctatgtataaaagtctttgcctgtatgtgtgtctatgcaccatagtgcctagaa 382

                                                                       
Query: 183 aggccagatgagggcatcaggtgccctggagctggagctacaggtagctatgattgccat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aggccagatgagggcatcaggtgccctggagctggagctacaggtagctatgattgccat 442

                                                                       
Query: 243 gctggaaaccaaacctatgtcttctgcaggaacaccaagtgctctcaaccactgagctgt 302
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gctggaaaccaaacctatgccttctgcaggaacaccaagtgctctcaaccactgagctgt 502

                                                                       
Query: 303 ctctctgacccttggctcactttttatgccaaatctcctcaactgtgagcacatcattgt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctctctgacccttggctcactttttatgccaaatctcctcaactgtgagcacatcattgt 562

                                                                       
Query: 363 ggcacatcatttcccaaatgcagtcaggcactgtagaacacatatgatggtggtcctgga 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggcacatcatttcccaaatgcagtcaggcactgtagaacacatatgatggtggtcctgga 622

                                                                       
Query: 423 aggtttttaataaagatgaagcatttttccccctggtgaaatgacaactgtctcagtgtc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aggtttttaataaagatgaagcatttttccccctggtgaaatgacaactgtctcagtgtc 682

                                                                       
Query: 483 atagtgaaagccatcacttattggtgatgcctcatgaatacaactgtgatactggtctaa 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atagtgaaagccatcacttattggtgatgcctcatgaatacaactgtgatactggtctaa 742

                                                                       
Query: 543 aaattgtgatgcctatagtatgaaagtacaagaatataagtacatagaggcgtcatactt 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aaattgtgatgcctatagtatgaaagtacaagaatataagtacatagaggcgtcatactt 802

                                                
Query: 603 aatgaaggtcacaagcaactctggaattactgtatta 639
           |||||||||||||||||||||||||||||||||||||
Sbjct: 803 aatgaaggtcacaagcaactctggaattactgtatta 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no153_g04.g1 MSMg01no153_g04.g1 CHROMAT_FILE:
MSMg01no153_g04.g1 PHD_FILE: MSMg01no153_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:45 2005
         (396 letters)



>mm_chr15_32198871_32199666
          Length = 796

 Score =  735 bits (380), Expect = 0.0
 Identities = 392/396 (98%), Gaps = 1/396 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaacagcctcc-aacaccaaaagctaggcatgaggggtggggtgggctgggctgggggc 59
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 agaacagcctccaaacaccaaaagctaggcatgaggggtggggtgggctgggctgggggc 710

                                                                       
Query: 60  tgggaggtgaggatttcagagtgaactcctaaagaaagcaaagagcaacaccttgatttt 119
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 709 tgggaggtgaggatttcagagtgatctcctaaagaaagcaaagagcaacaccttgatttt 650

                                                                       
Query: 120 gaacttctgacatccaaaactgagagaactgatcactgctgctttcaaaggattccaaat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gaacttctgacatccaaaactgagagaactgatcactgctgctttcaaaggattccaaat 590

                                                                       
Query: 180 gtggagtgatttgttcagtagcctagggaaagaaacacaaatgttacagatagccatata 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gtggagtgatttgttcagtagcctagggaaagaaacacaaatgttacagatagccatata 530

                                                                       
Query: 240 aaataaccaaaaagttttggtcagactaaaagaaattttcatgttctcaactattatcaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aaataaccaaaaagttttggtcagactaaaagaaattttcatgttctcaactattatcaa 470

                                                                       
Query: 300 tacagttacaaacaaataaacatgaacattttgtcagctacatgctaagcatgtgtgtgt 359
           |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 469 tacagttacaaacaaatacacatgaacattttgtcagctacatgctaagcatgcgtgtgt 410

                                               
Query: 360 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttg 395
           ||||||||||||||||||||||||||||||||||||
Sbjct: 409 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttg 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)