BAC Information

Click to search

BAC

Clone NameMSMg01-153I01
Chromosome15 (Build37)
Map Location 87,910,510 - 87,911,107
singlet/doubletsinglet
Overlap genenone
Upstream geneAW049604, LOC100042329, LOC100042340
Downstream geneZdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153I01.T7 (MSMg01no153_i01.b1)MSMg01-153I01.TJ (MSMg01no153_i01.g1)
ACCAG355084AG355085
length680677
length of high quality
(start - end)
481 (74 - 554)599 (79 - 677)
definitionCHROMAT_FILE: MSMg01no153_i01.b1 PHD_FILE: MSMg01no153_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:53 2005CHROMAT_FILE: MSMg01no153_i01.g1 PHD_FILE: MSMg01no153_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTATAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAG
CGCGGAATTCAGAACTCTTCCGCTGGGGAACAGGGTACCCGTAAGTATAG
CTTTACAAGGTAAGTCTGGCCTTGAACTTTCTAACGAAATTCGAGACAGT
CTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTAAGTCTGGCCTTGA
ACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGGAATAG
CTTTACAAGGTACGTCTGGCCTTGAACTTTCTAACGAAATTCAAGACAGT
CTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGCCTTGA
ACTTTTTCTAGTGTTAGGAGCCTTTTTGTTCCTTTTCACATGTTATCAAG
CGGTTAAGGCAGGGCTGAAAATTCTGGATGAAATTCAGGGCAATCTATCA
GAAGTAAAGCGGGGAGAGAGAGTAGGAGCAAAGAGGAAATATGGTACACA
AAATAAGTATACAGGCCTTTCCACGGGTCTTGAACCCGAGGAAAAGTTTA
GGTCAGGTAAGAATACCTGGGGAGAGATTATAAGGAAGGAGAAGGAAAAA
GAAAAGAAAAAAGATCAATTATCGGAGGTCTCTAGGAGAAGGAGCCTATA
CTCATCACTAGGTGAGCTCAAGGAGCCAGT
TCCATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTCCAGAGAAAAGAAAAGGG
AGAGTCTAGAAGCTCAAATCCTGCACCCAAAGCTGGTTCTTGTCTGCTTC
CTTTGTGCAGCACAGGTTTCTTGCACATGCTCTATCTGCTACATGTCAGA
AGGTGTAAGGTCATTCCGAGCTTTCTTTGTCTACAGGTCTCTCCGTTTTC
TTGCTCCTTCTGCATCTTCTTTGTAAGGTCTTCTAGATCTCCCTCAGCGC
CCTTCCTCCCCACCTCATCCTTGGCTGCCTCCTGGATGCTCTGCCTCTGC
TTTTGCCTCTGGTGCTAAGGCTTAGACGCCCCAGGGTCTTGTCTTGTCTT
CTTGCAGCAAGCTAAGACTGAAGCATCTTTGAAAAAGACCACAGTGGCAA
AGAGAATATTCAGGAAGGGTCATTATTAGGACCAGTATTTCAATGCCAAA
GAGGGAGTGAGAGACATCTCCCGGAGTCCTCTGATAAACACTAAGACATA
GCTAAAGAAAAACAGGGATGTTCATAGCTAAAGAAAAACAGGGACGTACC
TCTGCCTGGATGCTATCCCACGAATCAATTCATTTACACCAATCACTGGA
ACTGGACCCCCGATTCCTGTGTGGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_i01.g1 MSMg01no153_i01.g1 CHROMAT_FILE:
MSMg01no153_i01.g1 PHD_FILE: MSMg01no153_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:53 2005
         (599 letters)



>mm_chr15_87910310_87911307
          Length = 998

 Score = 1089 bits (563), Expect = 0.0
 Identities = 590/599 (98%), Gaps = 1/599 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttccagagaaaagaaaagggagagtctagaagctcaaatcctgcacccaaagctggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 acttccagagaaaagaaaagggagagtctagaagctcaaatcctgcacccaaagctggtt 739

                                                                       
Query: 61  cttgtctgcttcctttgtgcagcacaggtttcttgcacatgctctatctgctacatgtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cttgtctgcttcctttgtgcagcacaggtttcttgcacatgctctatctgctacatgtca 679

                                                                       
Query: 121 gaaggtgtaaggtcattccgagctttctttgtctacaggtctctccgttttcttgctcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gaaggtgtaaggtcattccgagctttctttgtctacaggtctctccgttttcttgctcct 619

                                                                       
Query: 181 tctgcatcttctttgtaaggtcttctagatctccctcagcgcccttcctccccacctcat 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 618 tctgcatcttctttgtaaggtcttctagacctccctcagcgcccttcctccccacgtcat 559

                                                                       
Query: 241 ccttggctgcctcctggatgctctgcctctgcttttgcctctggtgctaaggcttagacg 300
           |||||||||||||||||||| |||| || |||||||||||| ||||||||||||||||||
Sbjct: 558 ccttggctgcctcctggatgttctgtctttgcttttgcctccggtgctaaggcttagacg 499

                                                                       
Query: 301 ccccagggtcttgtcttgtcttcttgcagcaagctaagactgaagcatctttgaaaaaga 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cctcagggtcttgtcttgtcttcttgcagcaagctaagactgaagcatctttgaaaaaga 439

                                                                       
Query: 361 ccacagtggcaaagagaatattcaggaagggtcattattaggaccagtatttcaatgcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ccacagtggcaaagagaatattcaggaagggtcattattaggaccagtatttcaatgcca 379

                                                                       
Query: 421 aagagggagtgagagacatctcccggagtcctctgataaacactaagacatagctaaaga 480
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 378 aagagggagtgagagacatctcccggagtcctctgat-aacactaagacatagctaaaga 320

                                                                       
Query: 481 aaaacagggatgttcatagctaaagaaaaacagggacgtacctctgcctggatgctatcc 540
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 319 aaaacagggatgttcatagctaaagaaaaacagggatgtacctctgcctggatgctatcc 260

                                                                      
Query: 541 cacgaatcaattcatttacaccaatcactggaactggacccccgattcctgtgtggcac 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cacgaatcaattcatttacaccaatcactggaactggacccccgattcctgtgtggcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 998
Length adjustment: 10
Effective length of query: 589
Effective length of database: 988
Effective search space:   581932
Effective search space used:   581932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)