BAC Information

Click to search

BAC

Clone NameMSMg01-154B14
Chromosome15 (Build37)
Map Location 79,960,522 - 80,147,194
singlet/doubletdoublet
Overlap geneMap3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i
Upstream gene1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1
Downstream geneEnthd1, Grap2, AW544981, Tnrc6b, Adsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154B14.T7 (MSMg01no154_b14.b1)MSMg01-154B14.TJ (MSMg01no154_b14.g1)
ACCAG355486AG355487
length708702
length of high quality
(start - end)
345 (69 - 413)610 (65 - 674)
definitionCHROMAT_FILE: MSMg01no154_b14.b1 PHD_FILE: MSMg01no154_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:38 2005CHROMAT_FILE: MSMg01no154_b14.g1 PHD_FILE: MSMg01no154_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,960,522 - 79,960,866)(80,146,732 - 80,147,194)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCANTATACCCAAGGGTGCACAGAGAAACCCTGTCTCAAAAAGCCA
AAATAAATAAACATATAAAATGGCCAATCCTGAGACCACACAGCCACCTG
GCAGAATCCTGCAATGGAGAGATTATAGAAAGGGAAGATAATCTATCCAG
TGTCACTTGCCTCTTGCTGGGCAGCAAGGCTACCATACCTGCTTGGGGTC
CTAGACAAAATGAAGAAATCCAAGGTGAGCCGGGCGTGGTGGCCCACGCC
TTTAATCCCAGCACTCGGTAGGCAGATTTCTGAGTTCGAGGCCAGCCTGG
TCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTC
TCGAAAACAAAACTAAACAAGACAAAACAAAACAAAACAAACAAACAAAA
AAGGAAATCCAAGGGGAAGATGAGGATTGGAGTGGAGATGGCAAGTTTTT
ATTTTTATTTTTTTCTCACTGTTCTTTAGGGTCCCAATATCATCTGCTCA
TGGCAACAGGCGTCCGTAGCGTTGGCTGTAGAATCATCAAATATCAGGTC
AGGGATCGACTGCAATCTGAGGTCGTTCTAGGTCCTCCCGTATCCACAGT
CCCTACTTGTAAACTTCTGACCCGATTTTCTGCCAAGCCTTCCTGCGCAT
ATTTACTT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCCACGCGGAATTCTGGAAAAATGGAAGGGAAGATGGAGACCC
CAAGAAGGTAGATGAGGAAGTCTGGTAATAAAACCGGTGGGGTCTGAATG
TTGTCTCCACAAGAAAATAGAGTGATCGATATCTCCCCATTGCCCCTCAG
CCAGAAACAAAGCCCTGGACCAGAGGCATTTAAGGATGTGTAAGTGAGGG
CTGGAGAGATGGCTCGGTGGTTAAGAACACTGACTGCTCTTCCAGAGGTC
CTGAGTTCAATTCCCAGCAACCACATGGTGGCGCACAACCATCTGTAATG
GGGATCCAATGCCCTCTTCTGATGTGTCTGAAGACAGTGGCAGTGTACTC
ACATACATGAAAAGGGATGTGCAACCGAGACCCAACCACTTGCCACACTG
AAAGACTCTCAGTCCTGTAGGAGTGAAAGCAGAGCAGCCCCTCCAATCCT
GCCACAGCATGGGATCCACGGCCCCACTGCATGATGGGTAACGGGAACAG
AGACTTAGCCAAGGACAGGGAGAGGCTGGAATAGAGACAATACTCATAAC
ACCCTGACCAATTGGGGTTCCCTGAGTCAGAACAGCTTCCAGCCTCTCCA
GGCACTACCTGTCTCCCTGAACAGCCCCAGAATGGTGACCACCCTGAGGA
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_b14.b1 MSMg01no154_b14.b1 CHROMAT_FILE:
MSMg01no154_b14.b1 PHD_FILE: MSMg01no154_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:38 2005
         (345 letters)



>mm_chr15_79960322_79961066
          Length = 745

 Score =  659 bits (341), Expect = 0.0
 Identities = 344/345 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtgcacagagaaaccctgtctcaaaaagccaaaataaataaacatataaaatggccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtgcacagagaaaccctgtctcaaaaagccaaaataaataaacatataaaatggccaat 260

                                                                       
Query: 61  cctgagaccacacagccacctggcagaatcctgcaatggagagattatagaaagggaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgagaccacacagccacctggcagaatcctgcaatggagagattatagaaagggaaga 320

                                                                       
Query: 121 taatctatccagtgtcacttgcctcttgctgggcagcaaggctaccatacctgcttgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatctatccagtgtcacttgcctcttgctgggcagcaaggctaccatacctgcttgggg 380

                                                                       
Query: 181 tcctagacaaaatgaagaaatccaaggtgagccgggcgtggtggcccacgcctttaatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctagacaaaatgaagaaatccaaggtgagccgggcgtggtggcccacgcctttaatcc 440

                                                                       
Query: 241 cagcactcggtaggcagatttctgagttcgaggccagcctggtctacaaagtgagttcca 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcactcgggaggcagatttctgagttcgaggccagcctggtctacaaagtgagttcca 500

                                                        
Query: 301 ggacagccagggctacacagagaaaccctgtctcgaaaacaaaac 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggacagccagggctacacagagaaaccctgtctcgaaaacaaaac 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no154_b14.g1 MSMg01no154_b14.g1 CHROMAT_FILE:
MSMg01no154_b14.g1 PHD_FILE: MSMg01no154_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:38 2005
         (610 letters)



>mm_chr15_80146185_80147194
          Length = 1010

 Score =  880 bits (455), Expect = 0.0
 Identities = 461/463 (99%)
 Strand = Plus / Minus

                                                                        
Query: 148  gccctggaccagaggcatttaaggatgtgtaagtgagggctggagagatggctcggtggt 207
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1010 gccctggaccagaggcatttaaggatgtgtaagtgggggctggagagatggctcggtggt 951

                                                                        
Query: 208  taagaacactgactgctcttccagaggtcctgagttcaattcccagcaaccacatggtgg 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950  taagaacactgactgctcttccagaggtcctgagttcaattcccagcaaccacatggtgg 891

                                                                        
Query: 268  cgcacaaccatctgtaatggggatccaatgccctcttctgatgtgtctgaagacagtggc 327
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 890  cgcacaaccatctgtaatggggatccaatgccctcttctggtgtgtctgaagacagtggc 831

                                                                        
Query: 328  agtgtactcacatacatgaaaagggatgtgcaaccgagacccaaccacttgccacactga 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830  agtgtactcacatacatgaaaagggatgtgcaaccgagacccaaccacttgccacactga 771

                                                                        
Query: 388  aagactctcagtcctgtaggagtgaaagcagagcagcccctccaatcctgccacagcatg 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770  aagactctcagtcctgtaggagtgaaagcagagcagcccctccaatcctgccacagcatg 711

                                                                        
Query: 448  ggatccacggccccactgcatgatgggtaacgggaacagagacttagccaaggacaggga 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710  ggatccacggccccactgcatgatgggtaacgggaacagagacttagccaaggacaggga 651

                                                                        
Query: 508  gaggctggaatagagacaatactcataacaccctgaccaattggggttccctgagtcaga 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650  gaggctggaatagagacaatactcataacaccctgaccaattggggttccctgagtcaga 591

                                                       
Query: 568  acagcttccagcctctccaggcactacctgtctccctgaacag 610
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590  acagcttccagcctctccaggcactacctgtctccctgaacag 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)