BAC Information

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BAC

Clone NameMSMg01-154H10
Chromosome15 (Build37)
Map Location 102,499,905 - 102,500,436
singlet/doubletsinglet
Overlap geneAtp5g2
Upstream geneKrt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600
Downstream geneCalcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154H10.T7 (MSMg01no154_h10.b1)MSMg01-154H10.TJ (MSMg01no154_h10.g1)
ACCAG355750AG355751
length751707
length of high quality
(start - end)		181 (43 - 223)536 (69 - 604)
definitionCHROMAT_FILE: MSMg01no154_h10.b1 PHD_FILE: MSMg01no154_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:06 2005CHROMAT_FILE: MSMg01no154_h10.g1 PHD_FILE: MSMg01no154_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXCNATTCAAAGAGGATCCGCGGAA
TTCTACCTTTCCCTTCAAAGAAAAATGAATGCCAATACTCCTCAAACTAT
TCCAAAGAATAGAAATAGAAACACGAAGGAACATTGACAAACTCATTCTA
TGAGGCTATAACTCATGACCTGAATAAAGATATAAACGGGGGGAGGGGGG
GTGGCAGAGCGGGAGGGGAGGGGAGGTCATTTCCCCTTTCCTCCTGTGTT
CTTTTTTTTCTTTCTTCTTTCCTCCCCTTTCTCCTCTTATTCCCTCTCCC
TCCTACCCCTTTTTTTTTTTTTTTTTCCTTTCTTCCACTTTCCTGCTCTT
TCTAATTTTTTTGTCCCTTCCCTTCTTCCCCTCTTTACCCCTTCCCTTCT
TTCACTTACCTCCCTTCCCTTTTCTCCCTTTTCTTCCCTTTTTTTTTTCA
CCTTTTCCATCTTTTTCTTCCTTTCTCTCCCCCCTTCCTTTTTTCACTTT
TCTTCCTTGTCTTTCCTCGCCCCCTTTTTTTCCCCTCTTCCCGCTTTCTT
TCTTTCCCCTCTTTTTCCCTCTATCCTTCCTTCCCTTTTTTTCTCCCCGC
CTTTACCCTTCCTTTCCCATTTACCCTTTCTCTCCTCTCCCCCCTCTCTC
CCCTCTTTTTCCTTTCCCCCCCTTTTCTCCCCCTTCCTCCTTTTCCTTAG
CCCCTCTCTCCTTTTTTCCCTTCTCCCGTCCCTACCGCCCTTGTTTTCTT
T

AATGXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAAAGTGTAGGTGAAC
TATAGAATTTCCTGCGAAATTCTTGGCTCCACAGTGCGACCCTGTAACAA
ACAAACTCCTCCCTTCTGCCTTTATGCAACCTAAACCCAGATTTGCTGCC
CACCTACTCAGGTTCAATTGAGTCGAAACCCAGTACTTCTTTAAAACTTT
TGGAATAGAGACTTAAGCTGGGGTGATGGCTTAGATGATGGTGCCTGCCA
CACCCCGTGCGCTGGGTACCTATGGAAGCAGGTGGCCTGAAGCTGACTGG
CTTGCAATCAGAGTCTATGAGCTTCAGGTCAGTAAGACATCCTGTCTCAA
AAAGTGAGGGTGGAGTGGAAATGCCCCCCACATTAACCTCTCAGCATGCA
TGCATACATGTCACCATACACGTGAATAAAGGGAGGTCTGAAGTTAGGCA
TGGTGGTATGTGCAAGTGATCCTAGCACTGGGGAGGCTGACGCAGAAGGA
TCATAAATTTGAGGTAAACGTGGGTTAGAGTCAAGAAGCCAAAATAAAAT
GGAAGACGTTTTTCCAAAAACAAGTTTTAACATGGTAACTTATAAAATGT
AGTTCTGGCAATACTCTAATTACTGCCCAACCCACTGCTTGCTTGCAGAG
AACTCAGTAAACAATTCTTTACAAAAAAAAAAATAAACGTATGGGACTTA
AATTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_h10.g1 MSMg01no154_h10.g1 CHROMAT_FILE:
MSMg01no154_h10.g1 PHD_FILE: MSMg01no154_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:06 2005
         (536 letters)



>mm_chr15_102499705_102500636
          Length = 932

 Score =  924 bits (478), Expect = 0.0
 Identities = 520/536 (97%), Gaps = 4/536 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcttggctccacagtgcgaccctgtaacaaacaaactcctcccttctgcctttatgca 60
           |||||||||| ||||||||||||||||    |||||||||||||||| || |||||||||
Sbjct: 201 attcttggctacacagtgcgaccctgt----aacaaactcctcccttttgtctttatgca 256

                                                                       
Query: 61  acctaaacccagatttgctgcccacctactcaggttcaattgagtcgaaacccagtactt 120
           ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 257 acctaaacccagatttgatgcccacctactcaggtttaattgagtcgaaacccagtactt 316

                                                                       
Query: 121 ctttaaaacttttggaatagagacttaagctggggtgatggcttagatgatggtgcctgc 180
           |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 317 ctttaaaacttttgcaatagaggcttaagctgggttgatggcttagatgatggtgcctgc 376

                                                                       
Query: 181 cacaccccgtgcgctgggtacctatggaagcaggtggcctgaagctgactggcttgcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cacaccccgtgcgctgggtacctatggaagcaggtggcctgaagctgactggcttgcaat 436

                                                                       
Query: 241 cagagtctatgagcttcaggtcagtaagacatcctgtctcaaaaagtgagggtggagtgg 300
           ||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 437 cagagtcgatgagcttcaggtcagtaagacatcctgtctcgaaaggtgagggtggagtgg 496

                                                                       
Query: 301 aaatgccccccacattaacctctcagcatgcatgcatacatgtcaccatacacgtgaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaatgccccccacattaacctctcagcatgcatgcatacatgtcaccatacacgtgaata 556

                                                                       
Query: 361 aagggaggtctgaagttaggcatggtggtatgtgcaagtgatcctagcactggggaggct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aagggaggtctgaagttaggcatggtggtatgtgcaagtgatcctagcactggggaggct 616

                                                                       
Query: 421 gacgcagaaggatcataaatttgaggtaaacgtgggttagagtcaagaagccaaaataaa 480
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gatgcagaaggatcataaatttgaggtaaacgtgggttagagtcaagaagccaaaataaa 676

                                                                   
Query: 481 atggaagacgtttttccaaaaacaagttttaacatggtaacttataaaatgtagtt 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atggaagacgtttttccaaaaacaagttttaacatggtaacttataaaatgtagtt 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 932
Length adjustment: 10
Effective length of query: 526
Effective length of database: 922
Effective search space:   484972
Effective search space used:   484972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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