BAC Information

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BAC

Clone NameMSMg01-154K13
Chromosome15 (Build37)
Map Location 79,850,110 - 79,850,631
singlet/doubletsinglet
Overlap genenone
Upstream geneH1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb
Downstream geneRpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981, Tnrc6b, Adsl, LOC625672, Rutbc3, Mkl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154K13.T7 (MSMg01no154_k13.b1)MSMg01-154K13.TJ (MSMg01no154_k13.g1)
ACCAG355889AG355890
length667682
length of high quality
(start - end)
506 (45 - 550)522 (69 - 590)
definitionCHROMAT_FILE: MSMg01no154_k13.b1 PHD_FILE: MSMg01no154_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:21 2005CHROMAT_FILE: MSMg01no154_k13.g1 PHD_FILE: MSMg01no154_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGCTCCTATTCCAAGAGGACCGCGGAATTCACTTTGTAGCCCAGGCTGGC
CTTGAACTCAAAATATGCCTGCCTCTGCCTCCTGAGTGCTGGGACTAAAG
GCGTGCACCACTACTCCCAGCTCTTCTCTTGCTGTGATAATCCACCATGA
CCGAGGCACCTTACAGAAGGAAGAGTATGAATTGAGGCTTATAATTTCAG
GCAGGTAGGAGCCAATGATTGTGATGGCAGGGAGCAGGGCAGCAGGCAGG
CAAACACTGCACTGTTAGCGACAACTGTAGCTCACATCTGACCCACATAC
AGAAAAGCAGAGAGCCACTGGAGATGGCAGGAGGCTTTTGAAACCTCTAG
CCCACTCCCAGGAACACATGACACACTTCCTTCAATGAGGCTACACCTCC
TAACCCTTCCCAAACAGCCACCAGCTGGGGACCAAGTATTCAAATCTATG
AGGCTATGGGGCCATTCAAGTTCAAATCACCACAGTGGGCAAGTTCGCAC
AGTACCTTCCATTTTCTTACAGTGACTTTTTTTTTTTTTGAGGTGCAAGG
GTCCCCGAGCTGCACACTTGGGAATAGAGCTAGCTTTCCTTCCCATGCTT
AACTGGACTCGGGTCAGTAATGACCAAGTAGGGTCGGGTCACGCCCACTG
CTCTACCATGTTTTTAT
CATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCACAGCAGCCTTCCCTGGAGCTCAGGGAAGATG
CGGCCATCTGCCTGCCCTTGCTTCCAAGGCGCGACCGTCCTATGCCTGCT
GTGAGTGAGCAAGACATAGCACTACAGCTGAGGCAGCCACCACAGAGGCC
CAGAGAGTGCCTCTGGGCTGATCTGAGCTTGGCAGGGGTCTTCTCCACAA
GAACAAACCTTTGTCCATTCCAGGGAGAGGGCAGTGGTGAGAGGGCAGTG
GGTGGGTCCCCTCCCAGCCATCTGGCTGAGCTCTAAGTGACATCCAAGGA
CTCTGCTAACTTCCAGCCGTTTCCAGGTAGGCAAATCCAAGTCGCTGGTC
CAAACATCCACATCCTCTTCCTTGTCTGGAGCCTGGAGGATCTAAAAATG
TTACGGCTCTGCCTGGTGGGGTAAACAAACACTGGCTTCCCTTGCTCTGT
GTACCTGACAGGCCCAAGGCAGCAGGGTGGGCTCCTGTGGGCAGCCTGGA
CTCATGGTCCATGGGGCTGTTTTTCTTGGGCTTTCCCCTAAGGCGCATAG
CACAGGGGCCAGAGCCTTGTGGAGGAAGGCGTTATATCTCCCGCAGAAGA
CCTAGGGCTCTACTCGAGGAAAGGGCACTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_k13.g1 MSMg01no154_k13.g1 CHROMAT_FILE:
MSMg01no154_k13.g1 PHD_FILE: MSMg01no154_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:21 2005
         (522 letters)



>mm_chr15_79849910_79850831
          Length = 922

 Score = 1002 bits (518), Expect = 0.0
 Identities = 521/522 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagcagccttccctggagctcagggaagatgcggccatctgcctgcccttgcttccaag 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 722 acagcagccttccctggagctcagggaagatgcggccatctgcctgtccttgcttccaag 663

                                                                       
Query: 61  gcgcgaccgtcctatgcctgctgtgagtgagcaagacatagcactacagctgaggcagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gcgcgaccgtcctatgcctgctgtgagtgagcaagacatagcactacagctgaggcagcc 603

                                                                       
Query: 121 accacagaggcccagagagtgcctctgggctgatctgagcttggcaggggtcttctccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 accacagaggcccagagagtgcctctgggctgatctgagcttggcaggggtcttctccac 543

                                                                       
Query: 181 aagaacaaacctttgtccattccagggagagggcagtggtgagagggcagtgggtgggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aagaacaaacctttgtccattccagggagagggcagtggtgagagggcagtgggtgggtc 483

                                                                       
Query: 241 ccctcccagccatctggctgagctctaagtgacatccaaggactctgctaacttccagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ccctcccagccatctggctgagctctaagtgacatccaaggactctgctaacttccagcc 423

                                                                       
Query: 301 gtttccaggtaggcaaatccaagtcgctggtccaaacatccacatcctcttccttgtctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gtttccaggtaggcaaatccaagtcgctggtccaaacatccacatcctcttccttgtctg 363

                                                                       
Query: 361 gagcctggaggatctaaaaatgttacggctctgcctggtggggtaaacaaacactggctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gagcctggaggatctaaaaatgttacggctctgcctggtggggtaaacaaacactggctt 303

                                                                       
Query: 421 cccttgctctgtgtacctgacaggcccaaggcagcagggtgggctcctgtgggcagcctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cccttgctctgtgtacctgacaggcccaaggcagcagggtgggctcctgtgggcagcctg 243

                                                     
Query: 481 gactcatggtccatggggctgtttttcttgggctttccccta 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gactcatggtccatggggctgtttttcttgggctttccccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)