BAC Information

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BAC

Clone NameMSMg01-154L07
Chromosome15 (Build37)
Map Location 64,747,838 - 64,748,242
singlet/doubletsinglet
Overlap geneAdcy8
Upstream gene4933426G20Rik, 0910001A06Rik, Ddef1
Downstream geneLOC268812, LOC100040790, LOC665836, C920006C10Rik, Oc90
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154L07.T7 (MSMg01no154_l07.b1)MSMg01-154L07.TJ (MSMg01no154_l07.g1)
ACCAG355924AG355925
length704704
length of high quality
(start - end)
414 (46 - 459)---
definitionCHROMAT_FILE: MSMg01no154_l07.b1 PHD_FILE: MSMg01no154_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:25 2005CHROMAT_FILE: MSMg01no154_l07.g1 PHD_FILE: MSMg01no154_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTTATTCCGCCTTTTAAGATTAAGACTCATATCCACAGTGGGA
ATCAACTTGTGATGCATATTCACAAGGGGCTTTGTCTGCTCCTACGGTGG
GGTCTGCAGAGATTTGAAGCACAGTGGTTGCCCTTTCAAGGCATAGATGT
GATTTCTTAGGGGTGGAGACAGTAGCAGCAGAAACTCATGGCTTGGATTA
AGAAGGCAATTACTGGCTCGCTTATTACTTTTGAAGATGACATTTTCAGT
GAAGTGAGCCAGCTGACATTTTGTAGCTGACACTGGATTCTCATTTTAAT
CCCATGAGTCTTGAAAATACTAAGTTAAACCTGAGCCATCCTCTTTAAGG
GAATTAAGATAAACGCAAAGACCTGATATTCAAAGGGCTTATGGCCTTCA
GTTGACGACTTGGTACCCAGCTGAGCAGAACGATTTTAAAGAATCTATGC
CATTTCTGGCATTTTCTCTCTCAATTCCCTTCTGCATTTTTCATTAAATG
CTCATTGACGCAGTGTATCGGCCTTGTACTCTCTTGACTAGCAAAAGGAG
TCCCTTTTACTCTTAGTCTGCAGAAAGGATGCCCTTCGAGGTTGCCGATG
AACACCCAGCACTGGAGTTCAAATTCTATTTCTGTACTTACCCCCTGATA
GCTC
TCAATACAGCGGGACCCCGGGNGGNCGCCCTATCTAACCCGCAGGNGAAC
NANNGAATATCTGNGACCGGCCAAANAGCCNNNANANANGNNGCCCCCAC
CNGANNNAAAACACGCCCCCCACGGCCAGGAAACAAAGCCCAGAGCAGAG
CACGCCGGCCACGCAAGCCCGAGGACCACCAANCGGACGCACAGAACCCG
CGCAAAAGCCAACGAGGCACAGCCGAAGCCCGCAGCCCCAGCACCCTTCT
TTTTATAGGCAGGGGCTCCAGAGGGCAACCTGCCTATCCTGACTGCCTGG
AACCAGCACAATTTTTTTTTTTTTCACCAAGAGACCACGCCNAAAGGAAC
AAAATGGAAACCCCCCCCCCAACACAACGAAGCTCCGNGAGCAGAGAACG
GACAGAAGCAACGACCACACACATGGAACTCCCACCCGAAACCGCCAAAA
AGAACAATACCCCCCCGCGCCGAGAGAGTATCACAGCTATCGCTTAGTAC
AGAAAACAAAGCTTTCAAGCACAACGCACTCGCTACCATAGAATGTGCAG
ACACAACTTTGTTCAGTTTTTCCCGTCGCAGAACCCCACTAACCACTGCT
GTGCACCACGTATCCCCTGCTTATGCCCGCTGCCCTACCACCCCCCCCCT
TTTTTTTTTCAATCAGTCAAGCTACCCCCCTTTCTCACCCCCCCCTTTCA
CCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_l07.b1 MSMg01no154_l07.b1 CHROMAT_FILE:
MSMg01no154_l07.b1 PHD_FILE: MSMg01no154_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:25 2005
         (414 letters)



>mm_chr15_64747633_64748446
          Length = 814

 Score =  698 bits (361), Expect = 0.0
 Identities = 394/405 (97%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattctctttattccgccttttaagattaagactcatatccacagtgggaatcaacttgt 65
           ||||||||||| |  ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 206 aattctctttagtgagccttttaagattaagattcatatccacagtgggaatcaacttgt 265

                                                                       
Query: 66  gatgcatattcacaaggggctttgtctgctcctacggtggggtctgcagagatttgaagc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gatgcatattcacaaggggctttgtctgctcctacggtggggtctgcagagatttgaagc 325

                                                                       
Query: 126 acagtggttgccctttcaaggcatagatgtgatttcttaggggtggagacagtagcagca 185
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 326 acagtggttgccctttcaaggcacagatgtgatttcttaggggtggagacagtagcagca 385

                                                                       
Query: 186 gaaactcatggcttggattaagaaggcaattactggctcgcttattacttttgaagatga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaaactcatggcttggattaagaaggcaattactggctcgcttattacttttgaagatga 445

                                                                       
Query: 246 cattttcagtgaagtgagccagctgacattttgtagctgacactggattctcattttaat 305
           ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||
Sbjct: 446 cattttcagtgaagtgagccagctgacagggtgtagctgacactggattctcattttaat 505

                                                                       
Query: 306 cccatgagtcttgaaaatactaagttaaacctgagccatcctctttaagggaattaagat 365
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 506 cccatgagtcttgaaaatactaagttaaacctgagccatcctcttaaagggaattaagat 565

                                                        
Query: 366 aaacgcaaagacctgatattcaaagggcttatggccttcagttga 410
            || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 taatgcaaagacctgatattcaaagggcttatggccttcagttga 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)