BAC Information

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BAC

Clone NameMSMg01-154L10
Chromosome15 (Build37)
Map Location 40,204,455 - 40,204,768
singlet/doubletsinglet
Overlap genenone
Upstream geneRims2, Tm7sf4, Dpys, Lrp12, LOC100039130, LOC670013
Downstream geneLOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154L10.T7 (MSMg01no154_l10.b1)MSMg01-154L10.TJ (MSMg01no154_l10.g1)
ACCAG355930AG355931
length712712
length of high quality
(start - end)
---319 (314 - 632)
definitionCHROMAT_FILE: MSMg01no154_l10.b1 PHD_FILE: MSMg01no154_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:25 2005CHROMAT_FILE: MSMg01no154_l10.g1 PHD_FILE: MSMg01no154_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGGACTCCCAAATACCCTGTACAGGCTCCAGCCGCTGTTAACACCCT
CCAAGGCCCTTCACTCTGCAACTCACAGATCTGAGAAGACTTTAGGATAT
ATTTCTCTAAGGATTTTAATTCTCTTTCAGCTAATGACATGACAGGAGAA
GGTACAGAATTTTAGGAAGGAAACCAGGTGCCACAGAGGGAGAGGCCCAC
ACCACTGGAATTTCTTCAGGCTGAATTATGGCCATGTCGCAGTGTGTTTT
CTCATTACCCCAAAGTTGATTTCCAAGAATTTCAGAACAATGTTTGGCCT
TCTAAATATCAGCATTCTTGTCCAGAATGGAGATGGGAATCACTGGAAAA
CATAGAAATATTTTGACATGAGATTTTACAAAAATCTAACAGCAACGTTG
TTATTTTATTAGTTTAATGTATTTTGTATCACACACATGACTGCTGCTTG
AGAAGAGAACGGATGAGAATGGCCAAGGCTTGTGTCTGCCAGATTGAGAA
TCCATAGCTCCAGCATGATGGGAGCTCTAGCACCGTGGATATGATTGGCT
GTTATTGTTTCAGAAAAGAATATGCCACGAATCTGTTAGACACAAGTACT
TAATTACTCATTAGATTGAAGATGACCCCTTAAATATAAGCAAAGTGGTA
ACTACAATTTGG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCTGGGGACTATTGGTTGCACACAGA
CACACACACACACGCGCCCACGCTCGAACACACGCACACGCACACCCTGA
CGGACAGACAGGTACCTACGCTGCCAATTTTTTTCCCTTCGCCGGTTAAA
ATTGCAAGATTTCAAACCAAAAGATTCCTGACCAAGTTAGTAGAAAAGAA
CGATAAGAGAGTGGCCAGAAGTGTATAAGGTTTAAGGATGACTGACCAGA
ACAGAGCCGAAGCCTATGGTAAAGAGTTCAGCACAGTCTAAATATAAGAA
GGAGCTACTCAAGGAGCGAGCATTTTCTACATGATTGCACACTTCATCAG
CTGGCAACTATTCAAGGTATAGCTGACAGAGTTAAATCAAATTACCCAGT
AGTGTCAATCCTGTGTTGTAATGAAAAGACACTTGTAAGGAAACACTCTG
TGTTTAAACCAGAAACAAAACAACATGGTAGAAGAGCCCTATAAAGAGTC
TATTTTAGAACAAAAATTTTAAATGCTGAATTTTATGAAAATAGCTAAGA
ATCAGAAATCTCTATTTTGTTGGCTACTTTAGTGTGTGTGTGGAGTGTGT
GTGTGTGTGTGTGTGTGCGCCTTTTAACCTTGCCCCATTTTTCCCTTCCG
CCCTTCCACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_l10.g1 MSMg01no154_l10.g1 CHROMAT_FILE:
MSMg01no154_l10.g1 PHD_FILE: MSMg01no154_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:25 2005
         (319 letters)



>mm_chr15_40204250_40204968
          Length = 719

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gtaaagagttcagcacagtctaaatataagaaggagctactcaaggagcgagcattttct 65
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 206 gtaaagagttcagcacagtctaaatataagaaggagctactcaaggagtgagcattttct 265

                                                                       
Query: 66  acatgattgcacacttcatcagctggcaactattcaaggtatagctgacagagttaaatc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acatgattgcacacttcatcagctggcaactattcaaggtatagctgacagagttaaatc 325

                                                                       
Query: 126 aaattacccagtagtgtcaatcctgtgttgtaatgaaaagacacttgtaaggaaacactc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaattacccagtagtgtcaatcctgtgttgtaatgaaaagacacttgtaaggaaacactc 385

                                                                       
Query: 186 tgtgtttaaaccagaaacaaaacaacatggtagaagagccctataaagagtctattttag 245
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgtgtttaagccagaaacaaaacaacatggtagaagagccctataaagagtctattttag 445

                                                                       
Query: 246 aacaaaaattttaaatgctgaattttatgaaaatagctaagaatcagaaatctctatttt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aacaaaaattttaaatgctgaattttatgaaaatagctaagaatcagaaatctctatttt 505

                         
Query: 306 gttggctactttag 319
           ||||||||||||||
Sbjct: 506 gttggctactttag 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)