BAC Information

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BAC

Clone NameMSMg01-155M14
Chromosome15 (Build37)
Map Location 21,619,610 - 21,619,937
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh12
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155M14.T7 (MSMg01no155_m14.b1)MSMg01-155M14.TJ (MSMg01no155_m14.g1)
ACCAG356703AG356704
length735735
length of high quality
(start - end)
302 (127 - 428)327 (72 - 398)
definitionCHROMAT_FILE: MSMg01no155_m14.b1 PHD_FILE: MSMg01no155_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:46 2005CHROMAT_FILE: MSMg01no155_m14.g1 PHD_FILE: MSMg01no155_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACCAGTATCCCAAAAAGCTACAGTGAGCAGAGATGGAAACATAAC
TCAAGCCCTATGGAGGAAACCCGCCGATCATATGTGAATTTCAGACTCTG
GAACAAGAAGCTGTACGGTTGAAGTTAACTTGGATACCCCAAGATGCTAG
ATATGCCAGAGTTGTGAAATGCCTGCTGAAGAAAGCTGGACTTGGATCTA
GCCCAAGAGAAAGATATGTACTATAGTCATCAAATATGAAAGGAGTTGGA
CATTAGGCACAGAGAGGAAGAGTTTGAAGATTGCCCAGCTGGCTTTTGGT
CTTGCTTTCATCCAGTATTTTCTCACTATGACACTGTGAAATGATCATGT
ATATCCAGTAATGGTGCAGGTATTCGCTCAGCTATATAAATCTTGATTTT
ACACTTACATGATTAAATAAACCTAAGAAGACACTTTGAACACTGGACTT
TTAATGTTGCTGACGATGCTATTACACTACGGTAACTCTGGAAATTGTAC
TAAATGTATTTTGCATTATGCTATGGCTAGTTATGCCTCCCTTACACTCC
TGTCCGAACCCGACTTTGCTTGTCCCCTTATTGCCTGATTTACCTTGACT
ACGCTCGACCCAGGATTTGAGTGTCCGCATTAGATATGCCCACTCTTGTT
GCCCTTACCGTTACCCTCTCGCATTATTCGCCCCT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCACTAGAGGTGAACT
ATAGAAGGTTTCGAAAAAACTTCATGTTGCATTTGACTTCATTTTGAAAG
AAAATCAACTTTTCTAAGCCCAATTGCAAGATGCAAATTAATGGAAATAT
CAGAAGAAAAAAGAGATTTATTTACTGTAAATAAATAAATTCCACTTTGT
CCCGCACTTTGGAATGGAGGACAAAGATATCCCAGTGATCCTTATACGTT
CTTCTTCAGGGTCCAGACATGAAGGTATGATGTGCTTCAAATAGATAATA
ATAAGACATATACATATCTTTTCCATCTGGTCAAGGTGCGGTTCTCCGAT
CTCCACGGTATCATCTCTAACTTCTCAAGTCAGGCTGCCAACTCATGCAA
TGTAACCTGACACTACCCACACATATATTTCCCAGAAAAACAGTCCTCCT
GCGCTTTCAACCATTTTTCTCTCACTCTGGGAAATTTTTTTGATAATTCC
AATTTTTTGCCGCCTCATTCTCCCGTAGTCTGATACTCATAAGCGATAGA
ATAAACCGCCTCATTACAATATACTCCCTGTTGGTAGATAGGACGGTTTC
ACTCCCATACTTATCTCCGTGCGCGTGTTCGCCCGCGCGTTTTGCCTTTT
TTTCCCCTTCTTTTTCCCCCCCCTCTTTTACCCCTCCCCCACCCCCCACC
CCTTCTTCCCCATTCCCTTTACCTTTTTTTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_m14.g1 MSMg01no155_m14.g1 CHROMAT_FILE:
MSMg01no155_m14.g1 PHD_FILE: MSMg01no155_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:46 2005
         (327 letters)



>mm_chr15_21619410_21620137
          Length = 728

 Score =  542 bits (280), Expect = e-158
 Identities = 316/330 (95%), Gaps = 5/330 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgttgcatttgacttcattttgaaagaaaatca---acttttctaagcccaattgca 57
           |||||||||||||||||||||||||||||||||  |   |||||||||||||||||||||
Sbjct: 528 tcatgttgcatttgacttcattttgaaagaaaa--agacacttttctaagcccaattgca 471

                                                                       
Query: 58  agatgcaaattaatggaaatatcagaagaaaaaagagatttatttactgtaaataaataa 117
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 agatgcaaattaatagaaatatcagaagaaaaaagagatttatttactgtaaataaataa 411

                                                                       
Query: 118 attccactttgtcccgcactttggaatggaggacaaagatatcccagtgatccttatacg 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 attccactttgtcccgcactttggaatggaggacaaagatatcccagtgatccttatacg 351

                                                                       
Query: 178 ttcttcttcagggtccagacatgaaggtatgatgtgcttcaaatagataataataagaca 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 350 ttcttcttcagggtccagacatgaaggtatgatgtgcttcaaatagataataaaaagaca 291

                                                                       
Query: 238 tatacatatcttttccatctggtcaaggtgcggttctccgatctccacggtatcatctct 297
           |||||||||||   |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 290 tatacatatctaagccatctggtcaaggtgtggttctccgatctccacggtatcatctct 231

                                         
Query: 298 aacttctcaagtcaggctgccaactcatgc 327
           || ||||||||||||| || ||||||||||
Sbjct: 230 aaattctcaagtcaggttggcaactcatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 728
Length adjustment: 9
Effective length of query: 318
Effective length of database: 719
Effective search space:   228642
Effective search space used:   228642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)