BAC Information

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BAC

Clone NameMSMg01-156K13
Chromosome15 (Build37)
Map Location 51,402,725 - 51,403,061
singlet/doubletsinglet
Overlap genenone
Upstream geneTrps1, LOC100039644, LOC100039662
Downstream geneEif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8, LOC100039748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156K13.T7 (MSMg01no156_k13.b1)MSMg01-156K13.TJ (MSMg01no156_k13.g1)
ACCAG357342AG357343
length720752
length of high quality
(start - end)
320 (23 - 342)381 (76 - 456)
definitionCHROMAT_FILE: MSMg01no156_k13.b1 PHD_FILE: MSMg01no156_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:50 2005CHROMAT_FILE: MSMg01no156_k13.g1 PHD_FILE: MSMg01no156_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGCCCGTACCTAAACA
TAGTAAAAGCAATATGCAGCAAACCAGTAGCCAACATCCAACTAAATGGA
GGCCCACTTGAAGCAATCTTACTAAAAGCAGGGACTAGACAAGTCTGCCC
ACTCTCTCCCTATCTATTCAATATAGTACCTGAATTTCTAGCTAGAACAA
TTGGGCAACAAAAGAAGATCAAAGGGATACAAATTGGAAAGGAATAAGTC
AAAATATCACTATTTCCAGATGATATGATAGTATATTTAAATGATCCCAA
TAATTCCACCAGAGAACTCCTGAAGCTGATAAAAAAAACTTCTATTTATT
GGCTGCCATATACAATTAACTCAAACTAATCAGTAACCTTCCTCTACTCC
CGAATAAATGGGCTGAGAAAGAAATTATGGAAATAACACCCTTCACAATA
GTCACATATAATATTACATACCTTGGTGTGACTCTAACCAAACTAGTGAG
AGAGCTATATGACAAGAACTTCAAGTCTCTGAAGAAAGATATTATAGACC
TTAGAAGGTGGGAAGATTTTTCCACGCTCATGGATTGGCTGGATTAATAC
TGAAAAAATGGACATCTTGCTGAAAGCAATCATCTTTAGATTCAATGCTA
TCCCCATCAAAATTCCAAATCTATTCTTCTAAGAGTATGAAAGAGAATCT
CCCACATTCATTTGGAATAA
ATATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTAAGATACTGTGAAAAATCAAG
ATTGTTTATTCTTACTACTGAATGAATGAAATTCATTTATAATGTTGCTT
ACAGTTGGTGATTTCTCATTCATCCCTTGGTTCTTGAAATAGCTAGAAGT
TTCCTGATGCTAGAATGATAACTATCCAAATATGTCCTCATTCTAATGCC
GCTATATGTTACCTAAGTAGGCAAAAGAAATTTTTACTGAGGGCATTAAG
TTGAGGGTCTTTAAACGGGGATATTTACTGCATCCCCCACCCCCATAAAT
CTCCATGAGAGGAAGATGAGGGAGTCAAGTTCTGAGGGGAGATGTGATGG
AAACAGGAGGCTAATGTGATGTGCCTTCAAGGTGGAGAAAGGTTTCAATA
CAAGGATGGCCCATAGCACTCTGCATGATAAGTGGCGACAAAATAGATCT
ACCCTTGGCTTCTTCACAGGGACAGAAGTTACACTGATTCATGATTTTTA
CCTAGCAGATACAGTTTAAAATGAAGAACTAAAAACTATATGAAAAAAAT
TTGTTGCTTTAAACCTGGAAGATCAAGTTATTCATACCTTCATTGGTAAA
ATGGTACAGGCTGCTTATGGGAAACGCCATTAGGTAACAATTCTAAGAAA
TTGTAATTTTGAAATCCCACAGCTTTATTTCTCATAGGGTATAGTTTTGA
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_k13.g1 MSMg01no156_k13.g1 CHROMAT_FILE:
MSMg01no156_k13.g1 PHD_FILE: MSMg01no156_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:51 2005
         (381 letters)



>mm_chr15_51402725_51403505
          Length = 781

 Score =  644 bits (333), Expect = 0.0
 Identities = 336/337 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttaagatactgtgaaaaatcaagattgtttattcttactactgaatgaatgaaattca 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 337 atttaagatactgtgaaaaatcaatattgtttattcttactactgaatgaatgaaattca 278

                                                                       
Query: 61  tttataatgttgcttacagttggtgatttctcattcatcccttggttcttgaaatagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tttataatgttgcttacagttggtgatttctcattcatcccttggttcttgaaatagcta 218

                                                                       
Query: 121 gaagtttcctgatgctagaatgataactatccaaatatgtcctcattctaatgccgctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaagtttcctgatgctagaatgataactatccaaatatgtcctcattctaatgccgctat 158

                                                                       
Query: 181 atgttacctaagtaggcaaaagaaatttttactgagggcattaagttgagggtctttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 atgttacctaagtaggcaaaagaaatttttactgagggcattaagttgagggtctttaaa 98

                                                                       
Query: 241 cggggatatttactgcatcccccacccccataaatctccatgagaggaagatgagggagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  cggggatatttactgcatcccccacccccataaatctccatgagaggaagatgagggagt 38

                                                
Query: 301 caagttctgaggggagatgtgatggaaacaggaggct 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  caagttctgaggggagatgtgatggaaacaggaggct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)