BAC Information

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BAC

Clone NameMSMg01-156O22
Chromosome15 (Build37)
Map Location 45,060,940 - 45,061,251
singlet/doubletsinglet
Overlap genenone
Upstream geneTrhr, LOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
Downstream geneLOC100039389, EG432951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156O22.T7 (MSMg01no156_o22.b1)MSMg01-156O22.TJ (MSMg01no156_o22.g1)
ACCAG357545AG357546
length720797
length of high quality
(start - end)
316 (23 - 338)---
definitionCHROMAT_FILE: MSMg01no156_o22.b1 PHD_FILE: MSMg01no156_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:11 2005CHROMAT_FILE: MSMg01no156_o22.g1 PHD_FILE: MSMg01no156_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAATATGTTTCTGGGAC
CATCCTAATTTCTTGTCATCCATGCATATTCAGGTACTCTGTATAACAAA
CCTATTATATACATAAATAAACCAATTCACATAAATAACCCCCTATAGCC
ATAAACACCATGTTATTAATCTTAAGTCCCGATCCTGATTATTTGACCTC
AGACTTCATTCTCAATATGACAATGAAGAGGGTCCAGGTATCATTTTAGA
ACTTGTGTGTGATTTTTAATTAAAATTACAGATCCTAATTTGTACAACTG
AAAATTTTTCTTCCAATAGTCTTTGGTTGAGGCCAAATATTTTAATCCCC
CCCCACCCGTTCCATGTTCAAAACACAGCAGTAGACTGCAGTGCTCCTGT
GAAGGACAACACTTTATATTGTAGTAAGTCATATGTGGTGCTTTGTTTTC
TCTAGTTTTTCAGCTTTAACTTGTTTTTCAATTTTCTTTTTATTATGTGG
CTCTCAAAAGACCTGGAGCTAAAAATCCTAAGAAAAAGAGTCTAAAAGTA
ATTGTAAAAACAAGCTAGAAGATATAAATCTTAATAGGAGTTTGATTAAA
GTACATTTGTGCAGAACTATTCTACTAATAGCATTTACTACAACTAAACA
AACAAACAAACAAAATCCTAAAACAGTGGTGGATAATAGAGGAAGTAACA
TTTGCGGTGATAAGTACTGT
CCCCCNTTTTTTTTTTNTTCCTTTCTCTCCTTTTTTTTTTTANNNNNNNA
AATCAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTAATTAATTCACTTGAAA
AACATAATAAACATGTTTCTCTAATCTACAAAAACTGAACTAACTTCTCC
CACACAAAGAGATATTTTTGTCAAGAACATGAGGTCCTGCTGCTCTCCAA
AACTAAAACAAAGGCCTGAATTTGAACTTCCAACTGTCATGAAAAAATTG
CTGCCCAGGGAAGCCCTTTGCAAACTGTCTTCAACACAGCAACAAAAATT
TCTAGAACATGAATCTGATCAAAAATTACCTGAAAAATAGGGCTGGCATG
CCTTCCCATCACTCATAATGGGTCCCTAACAACCGCCACTAAAAAGCTTT
ATGAGGGGAATCCTACCAAAACGACCAAAAAAAACAACAACTCTAAAGGT
TCCATTACAAACCTGTCATGCAAAAAGGCTCAAGGACATATAACTCTACA
TATGTGACTTCTTTCTCAAACACCCACACCATTTGTCTCCCCAACACCAA
TATCAGTAAAATGATCTACCAATCCCTCCAACCTTTTTTAAGGACTAACG
TTTTTATATTACAAAAATTAGAAAAGTACCATAATTATATACCGCTCAGT
TCTGTCTAAGGGAAATTATGGAAATAAACTACAAAGGTTGACAAAAATAA
AAAAAACATAAGGTCCAAAAGGAGGGAAAAACAATTCCCCACAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_o22.b1 MSMg01no156_o22.b1 CHROMAT_FILE:
MSMg01no156_o22.b1 PHD_FILE: MSMg01no156_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:11 2005
         (316 letters)



>mm_chr15_45060736_45061451
          Length = 716

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaatatgtttctgggaccatcctaatttcttgtcatccatgcatattcaggta 64
           |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaatccttaatatgtttctgggaccatcctaatttcttgtcatcaatgcatattcaggta 264

                                                                       
Query: 65  ctctgtataacaaacctattatatacataaataaaccaattcacataaataaccccctat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctctgtataacaaacctattatatacataaataaaccaattcacataaataaccccctat 324

                                                                       
Query: 125 agccataaacaccatgttattaatcttaagtcccgatcctgattatttgacctcagactt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agccataaacaccatgttattaatcttaagtcccgatcctgattatttgacctcagactt 384

                                                                       
Query: 185 cattctcaatatgacaatgaagagggtccaggtatcattttagaacttgtgtgtgatttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cattctcaatatgacaatgaagagggtccaggtatcattttagaacttgtgtgtgatttt 444

                                                                       
Query: 245 taattaaaattacagatcctaatttgtacaactgaaaatttttcttccaatagtctttgg 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tacttaaaattacagatcctaatttgtacaactgaaaatttttcttccaatagtctttgg 504

                       
Query: 305 ttgaggccaaat 316
           ||||||||||||
Sbjct: 505 ttgaggccaaat 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)