Query= MSMg01no157_d07.b1 MSMg01no157_d07.b1 CHROMAT_FILE:
MSMg01no157_d07.b1 PHD_FILE: MSMg01no157_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:30 2005
(681 letters)
>mm_chr15_20208291_20209370
Length = 1080
Score = 735 bits (380), Expect = 0.0
Identities = 401/408 (98%), Gaps = 1/408 (0%)
Strand = Plus / Minus
Query: 5 gaattctacccaaataccacacaatttagatttcatactactacatgtttaaaaaatagt 64
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gaattctacccaaa-aggacacaatttagatttcatactactacatgtttaaaaaatagt 349
Query: 65 caaataaattttggccttagattaaaaacaatttacagaatgttttaattatttaatcat 124
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 348 caaataaattttggctttagattaaaaacaatttacagaatgttttaattgtttaatcat 289
Query: 125 aattttatctttgtgatatttggcaaactttactttcaatatgatagtttataacataat 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 288 aattttatctttgtgatatttggcaaactttactttcaatatgatagtttataaaataat 229
Query: 185 aattaaaaaaaaaacctgatcacaagacatcttggattctggactccaccgagactactc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 aattaaaaaaaaaacctgatcacaagacatcttggattctggactccaccgagactactc 169
Query: 245 tgcacaggtgagagggtggactacagaagctaacagcttctgggacaggccctgtttcgg 304
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tgcacaggtgagagtgtggactacagaagctaacagcttctgggacaggccctgtttcgg 109
Query: 305 gccttcatcttctgacaggaggtaagtctgaacgccacatatctgtgcaccttccctgaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gccttcatcttctgacaggaggtaagtctgaacgccacatatctgtgcaccttccctgaa 49
Query: 365 agaggagagcctgcctgcagagagtgctctgaccactgaaactcagga 412
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 agaggagagcctgcctgcagagagtgctctgaccactgaaactcagga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1080
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1070
Effective search space: 717970
Effective search space used: 717970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_d07.g1 MSMg01no157_d07.g1 CHROMAT_FILE:
MSMg01no157_d07.g1 PHD_FILE: MSMg01no157_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:31 2005
(238 letters)
>mm_chr15_20061102_20061739
Length = 638
Score = 433 bits (224), Expect = e-126
Identities = 238/250 (95%), Gaps = 12/250 (4%)
Strand = Plus / Plus
Query: 1 atttacaatatttttgactattccactccctctccaactccttctatatccttcctacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttacaatatttttgactattccactccctctccaactccttctatatccttcctacta 260
Query: 61 aattcctctcctcttctttattgtagttatgctacatatataggtagttatactacatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattcctctcctcttctttattgtagttatgctacatatataggtagttatactacatat 320
Query: 121 atattaaatacaatatatagttatatatacattatacataatatatcactatactatt-- 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atattaaatacaatatatagttatatatacattatacataatatatcactatactatttt 380
Query: 179 ----------atatatatatatatatatatatatatatatatatatatatatggagagag 228
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatttatatatatatatatatatatatatatatatatatatatatatatatggagagag 440
Query: 229 actatgtatg 238
||||||||||
Sbjct: 441 actatgtatg 450
Score = 83.9 bits (43), Expect = 8e-21
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 178 tatatatatatatatatatatatatatatatatatatatatat 220
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tatatatatatatatatatatatatatatatatatatatatat 387
Score = 83.9 bits (43), Expect = 8e-21
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 178 tatatatatatatatatatatatatatatatatatatatatat 220
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tatatatatatatatatatatatatatatatatatatatatat 389
Score = 81.9 bits (42), Expect = 3e-20
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 178 tatatatatatatatatatatatatatatatatatatatata 219
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tatatatatatatatatatatatatatatatatatatatata 386
Score = 81.9 bits (42), Expect = 3e-20
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 179 atatatatatatatatatatatatatatatatatatatatat 220
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atatatatatatatatatatatatatatatatatatatatat 391
Score = 78.1 bits (40), Expect = 5e-19
Identities = 49/52 (94%), Gaps = 2/52 (3%)
Strand = Plus / Minus
Query: 170 tatactat-tatatatatatatatatatatatatatatatatatatatatat 220
|||| ||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 431 tata-tatatatatatatatatatatatatatatatatatatatataaatat 381
Score = 76.1 bits (39), Expect = 2e-18
Identities = 48/51 (94%), Gaps = 2/51 (3%)
Strand = Plus / Minus
Query: 170 tatactat-tatatatatatatatatatatatatatatatatatatatata 219
|||| ||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 429 tata-tatatatatatatatatatatatatatatatatatatataaatata 380
Score = 66.5 bits (34), Expect = 1e-15
Identities = 49/54 (90%), Gaps = 4/54 (7%)
Strand = Plus / Minus
Query: 161 atatatcactatactat-tatatatatatatatatatatatatatatatatata 213
|||||| | |||| ||| |||||||||||||||||||||||||||||| |||||
Sbjct: 430 atatat-a-tata-tatatatatatatatatatatatatatatatataaatata 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 35
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 10
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space: 144041
Effective search space used: 144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
