BAC Information

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BAC

Clone NameMSMg01-157K08
Chromosome15 (Build37)
Map Location 72,918,404 - 72,918,716
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13, LOC100041120
Downstream geneChrac1, Eif2c2, Ptk2, LOC666053, LOC100040929, Dennd3, Slc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966, EG666113
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157K08.T7 (MSMg01no157_k08.b1)MSMg01-157K08.TJ (MSMg01no157_k08.g1)
ACCAG358068AG358069
length730728
length of high quality
(start - end)
316 (36 - 351)---
definitionCHROMAT_FILE: MSMg01no157_k08.b1 PHD_FILE: MSMg01no157_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:02 2005CHROMAT_FILE: MSMg01no157_k08.g1 PHD_FILE: MSMg01no157_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCATT
TCTCTGAACTCTCTAGACATCTTCCTGATTCCATGTCCTCCCGTCCTGAA
TCCAAACCCACTCAAAACAAACTGTACAAAAACAATCAGTTAAAGAGACA
AGCCAAAACAAAAACCCTTGAGGGGCAATTGCACAGCATTTCTTGAGTTT
TCTGGCCATGTCCTGTGCTTGCTGCTGGTTAAAATTTAATTTATAAGGTA
CCGGGTGGTGATAGGGTCAATGTCACATGCCTTTTAATCCCAGCCTTCAG
GAGACAGAGGCAGGTGGATCTCCGTGAGTTCAACACCCGCCTGGTCTAGA
GCTATGTTTCAGGACACCCCCGCCTATGTGAAGAAACCCTGTCTTAGAAA
ACAAACNACACAAAAGAAAGAAGACAGATTGCCTAATAGGGAAACTTTAT
TCAAAGCAAAGCAATACAGATTAGGAGTGTGTGGTCAAGAAAACAGTGGG
TCACATCAGTGAAGATACTCAGGGGCCTCACATTATTATTACCCTAGCTT
CAGAGATCTGAAGGGAGGGAAGCTAGTTACTAAGGGGGTATAGTTTGGGT
GATTCACTATTTTGACAGGTTAATACTTTTCTACCTTACATGCCCTCCAA
TAATGTTTGATTTTTAACTCCATGCACAACCCAGCTGTAACTAGGCAATA
AGATGGAACAATGTTCTTTCCTAAGAGCTC
AGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATTTCGGTCCCCGGGTTGGCCAACTAATTTGGGGGA
GGGAAAGCTAAAAAACAAGCCACCTGGGCCTTGGCCTGGAAAAGGGTAAT
CTGGCCATAAGGCCCTTCCAACCTCCCAAAGGTTCAAAAAATTCATCAGT
TTGGTCTAAAAGAAGGAAGGCCAGGGCCGGGGGTTATACTAAAATCCATC
TTTTCCCACCAACCTCAAAGGAACAAGGGGAAACCACAAACACATCAAGG
CAAAGCAAAAACGGATTTTTACTCCTTATAGAAAACAAAAAAAAAAAAAA
ATTAAAATGCTTCGGGAACAAAACCCAGGGTTAAGGGGTAAAAAGAATGG
ACGGGTCTCCCAAAAAAAAAAATAAAAAAAACCATCGGTAAGAGGGCCAA
AGGCCTTCTGTGGATGGAAAACAAACTTTGGTAATTGAAGGCAAAGAATC
AAAAGGCCCAAAAAAGGGGGGATGGAGAACAATGGCTGGTTTTGAACCAC
CTGTCCGGAAAAAAATAATCCAAGGAAAAAACATTCATAAACTTTGACCT
ATAATTCCGGCAAAAAAGGCATAGGTAATTATTAAGGAGCTCCAGCACCC
AAACCTGGGGGCAATCCTTAAGAAGCAATCGGGGGGTATTCCAATCCATC
GAGGTTATAACCCTTCGGACCCCGGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_k08.b1 MSMg01no157_k08.b1 CHROMAT_FILE:
MSMg01no157_k08.b1 PHD_FILE: MSMg01no157_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:02 2005
         (316 letters)



>mm_chr15_72918201_72918916
          Length = 716

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcatttctctgaactctctagacatcttcctgattccatgtcctcccgtcctg 63
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 204 ggaattctcatttctctgaactctctagacatcttcctgattccatctcctcccgtcctg 263

                                                                       
Query: 64  aatccaaacccactcaaaacaaactgtacaaaaacaatcagttaaagagacaagccaaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatccaaacccactcaaaacaaactgtacaaaaacaatcagttaaagagacaagccaaaa 323

                                                                       
Query: 124 caaaaacccttgaggggcaattgcacagcatttcttgagttttctggccatgtcctgtgc 183
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 324 caaaaacccttgaggggcaattgcacagcatttctttagttttctggccatgtcctgtgc 383

                                                                       
Query: 184 ttgctgctggttaaaatttaatttataaggtaccgggtggtgatagggtcaatgtcacat 243
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 384 ttgctgctggttaaaatttaatttataaggtaccaggtggtgatagggtcaatgtcacat 443

                                                                       
Query: 244 gccttttaatcccagccttcaggagacagaggcaggtggatctccgtgagttcaacaccc 303
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gccttttaatcccagtcttcaggagacagaggcaggtggatctccgtgagttcaacaccc 503

                        
Query: 304 gcctggtctagag 316
           |||||||||||||
Sbjct: 504 gcctggtctagag 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)