BAC Information

Click to search

BAC

Clone NameMSMg01-158G14
Chromosome15 (Build37)
Map Location 50,612,957 - 50,784,388
singlet/doubletdoublet
Overlap geneTrps1, LOC100039644
Upstream geneLOC665160
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158G14.T7 (MSMg01no158_g14.b1)MSMg01-158G14.TJ (MSMg01no158_g14.g1)
ACCAG358630AG358631
length706704
length of high quality
(start - end)
314 (35 - 348)285 (65 - 349)
definitionCHROMAT_FILE: MSMg01no158_g14.b1 PHD_FILE: MSMg01no158_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:56 2005CHROMAT_FILE: MSMg01no158_g14.g1 PHD_FILE: MSMg01no158_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,612,957 - 50,613,266)(50,784,138 - 50,784,388)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTTTC
CATGTATAGAACAATGTGCCATGTAGTCTCTGCAGAAGATATTAGCGGTG
ATAACACCAGTAAATTCTTCAGAAGTACAAAGTTCAGAAGCCGAGCCAAT
ATTGCACTTATAATTTATCACAGCCTAGCACAGCCTTACTATTGCAATCT
ACAGTTTACCATGTCGGCAATTTACAATTCAAATGAGTCTTCCTTTGTCA
AAGAATGGACTGTTCTACCCACAGTCAGTATGACACAAAAATGTCTGGTC
AGTTTCATTTTATATGCAAGCTTTATTTGGTAATGTTACCTAATTACTAT
CATTATTTCCCNTGCTTGCCGCCCGGCAACATTTATCAGGCAAAATGTAA
TTTGGACCCCCCCCAAAAAACAAAACCTAATTCATTTCCTGACATTTCGA
AATATTCATGTCCTGATTAGACATATTATGTCTTTAAAGCTATAATACTG
AGATGATTTATTTATTTCTTGGAGCAGTGTTAAACAAATACTCTCTAAAG
GGAAGGAAGAAGAGAACATATGAAGTCCTTTCCAAGACGGTGGAATAAAA
ATAAACAAGATAGATCCTATACATCTGAAGAGATGAGCTAAGAGGGCGGA
GGCAAGGGTTAGGCCTAAGGAAAAGGATTTAGGCGTCCGGCCACTCCTAA
GTTTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCATACATTCAAGATGAAGAACAATATTATTTTTACC
AACTAGGATGGACATATTTGCTATCATTGCAGGAAATAATTCCAGGTACA
AGGGGTAGACAAAGGCATCCACATAAACCCATTGTAATTAATTTAAATAA
AAGACCACTTGAAAAGAGACAGACCTTCACATTTAGGAGATTAAATCAAT
GGAACTGAGATAGAGAAAAGCACTGTAATATGGAAAATCATGAACATAAG
TACATTAATAAATACTTTAATTATAATTAATAAGTACATTAATAATACTT
GTCATACCCCACCCCCCCCCACAATACTGTGGAAAACCAGAGGACAGAGT
ATTATCCCCAAAGGAAAAAAAAAGGAAGTGTTTTATATAATATGAAATGA
CATAGGAGATAGAACCTGCTAGGTCATAGAGTTATAAGAGACACTCAAAT
GTTGGCATTCTTTCCTTTCTATGTTGTTGGGTTCTTTCTTCTATCTCTAC
TTTGGTACTCCACCCTTATTCCACCCTAATCCCTTCCCATCCTGTAAGAA
CAGAAAGAAGGTTGAAGGAGAAAGGGGGTGTAGTCCTCATTCCGTCAACA
GAGAAGACTGTTTTCTGCTGGTTATGGACACTGAGTTCCTTGGGGAAAAG
TCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_g14.b1 MSMg01no158_g14.b1 CHROMAT_FILE:
MSMg01no158_g14.b1 PHD_FILE: MSMg01no158_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:56 2005
         (314 letters)



>mm_chr15_50612753_50613466
          Length = 714

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttttccatgtatagaacaatgtgccatgtagtctctgcagaagatattagcgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttttccatgtatagaacaatgtgccatgtagtctctgcagaagatattagcgg 264

                                                                       
Query: 65  tgataacaccagtaaattcttcagaagtacaaagttcagaagccgagccaatattgcact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgataacaccagtaaattcttcagaagtacaaagttcagaagccgagccaatattgcact 324

                                                                       
Query: 125 tataatttatcacagcctagcacagccttactattgcaatctacagtttaccatgtcggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tataatttatcacagcctagcacagccttactattgcaatctacagtttaccatgtcggc 384

                                                                       
Query: 185 aatttacaattcaaatgagtcttcctttgtcaaagaatggactgttctacccacagtcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatttacaattcaaatgagtcttcctttgtcaaagaatggactgttctacccacagtcag 444

                                                                       
Query: 245 tatgacacaaaaatgtctggtcagtttcattttatatgcaagctttatttggtaatgtta 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 tatgacacaaaaatgtctggtcagtttcattttaaatgcaagctttatttggtaatgtta 504

                     
Query: 305 cctaattact 314
           ||||||||||
Sbjct: 505 cctaattact 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no158_g14.g1 MSMg01no158_g14.g1 CHROMAT_FILE:
MSMg01no158_g14.g1 PHD_FILE: MSMg01no158_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:56 2005
         (285 letters)



>mm_chr15_50783950_50784634
          Length = 685

 Score =  462 bits (239), Expect = e-135
 Identities = 248/251 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catacattcaagatgaagaacaatattatttttaccaactaggatggacatatttgctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 catacattcaagatgaagaacaatattatttttaccaactaggatggacatatttgctat 380

                                                                       
Query: 61  cattgcaggaaataattccaggtacaaggggtagacaaaggcatccacataaacccattg 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 379 cattgcaggaaataattccaggtacaagaggtagacaaaggcatccacataaacccattg 320

                                                                       
Query: 121 taattaatttaaataaaagaccacttgaaaagagacagaccttcacatttaggagattaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 taattaatttaaataaaagaccacttgaaaagagacagaccttcacatttaggagattaa 260

                                                                       
Query: 181 atcaatggaactgagatagagaaaagcactgtaatatggaaaatcatgaacataagtaca 240
           |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 259 atcaatggaactgagatagagaaaagcattgtactatggaaaatcatgaacataagtaca 200

                      
Query: 241 ttaataaatac 251
           |||||||||||
Sbjct: 199 ttaataaatac 189


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)