BAC Information

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BAC

Clone NameMSMg01-159E02
Chromosome15 (Build37)
Map Location 14,087,212 - 14,087,538
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh6, LOC100039907, LOC666686, LOC239338, LOC666708
Downstream geneLOC674819, LOC100040024, LOC100040033
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159E02.T7 (MSMg01no159_e02.b1)MSMg01-159E02.TJ (MSMg01no159_e02.g1)
ACCAG359247AG359248
length739737
length of high quality
(start - end)
330 (44 - 373)563 (73 - 635)
definitionCHROMAT_FILE: MSMg01no159_e02.b1 PHD_FILE: MSMg01no159_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:57 2005CHROMAT_FILE: MSMg01no159_e02.g1 PHD_FILE: MSMg01no159_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAATGCATTTCTCATTGCCAACAAGTTGTACCCCACATATTTCTAAA
GGAATAAATGTTTATCATTTAAAGTTTTAAATAAGCTTTACTATGTAAAT
GGGTTATTTTTAGGAAGACTGCAAAGCTCTTTGAATTGTATAAGACTGCT
GTAGTTAAGCCCCAAGTTCTTTGGGTTTTTTGTTTGTTTGTTTGTTTGTT
TGTTTGCTTGTTTCTTGTTTGCAGCTCCATTCTCCCAGAAATGAGACTCA
GACTTAAAATTTGTTTATAAATAACTTGGCAATATAGTTGGTCTCTTTCT
TGATTAGGGCTATAACTTAAGATAAACTTCCACTTCTATGCAAGCCATTT
ATTTGAAATGCCACCTGTATGTAGGATAAAGTCGCTGTTACATGCTGGTG
AGTAACAGTAGAAAAAATAGAACCAGTGAAAACCTCCATACAACTGTGAT
GGTACTCAAAAGAGAAATGAACCATTTACAATGCTTCACACAGACTAATT
CAAGTTTGGAGGTACCTAAATAAAAATACTCTATATTAAAAAAAAAAAAA
CACTTTGTACAGTTGAAGCATTAAACAAGTTTTGGAAAGTACTGGTTACA
CAGGTTGTAAAAACACTTTCATAGAACATGAAATGAGGTTAAGAAAGATT
TTTGAGCCTTTAACGTTGAAGGTACTCGATGCTACCATT
TTGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGTAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGATATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACGACTCTGGAAATCA
TTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGGGTATATATCCAGAACACTGCCCCAACTGGTAAGAAG
GACAAATGCTCCACTATCTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGTATTCACTGATAAGTG
GATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACAATTTGCTA
AACACATGAAACTCAGGAAGAATGAAGACTGAAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_e02.b1 MSMg01no159_e02.b1 CHROMAT_FILE:
MSMg01no159_e02.b1 PHD_FILE: MSMg01no159_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:57 2005
         (330 letters)



>mm_chr15_14087180_14087909
          Length = 730

 Score =  617 bits (319), Expect = 0.0
 Identities = 325/327 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaatgcatttctcattgccaacaagttgtaccccacatatttctaaaggaata 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggaattcaaatgcatttctcattgccaacaagttgtaccccacatatttctaaaggaata 300

                                                                       
Query: 64  aatgtttatcatttaaagttttaaataagctttactatgtaaatgggttatttttaggaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aatgtttatcatttaaagttttaaataagctttactatgtaaatgggttatttttaggaa 240

                                                                       
Query: 124 gactgcaaagctctttgaattgtataagactgctgtagttaagccccaagttctttgggt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gactgcaaagctctttgaattgtataagactgctgtagttaagccccaagttctttgggt 180

                                                                       
Query: 184 tttttgtttgtttgtttgtttgtttgtttgcttgtttcttgtttgcagctccattctccc 243
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tttttgtttgtttgtttgttcgtttgtttgcttgtttcttgtttgcagctccattctccc 120

                                                                       
Query: 244 agaaatgagactcagacttaaaatttgtttataaataacttggcaatatagttggtctct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 agaaatgagactcagacttaaaatttgtttataaataacttggcaatatagttggtctct 60

                                      
Query: 304 ttcttgattagggctataacttaagat 330
           ||||||||||| |||||||||||||||
Sbjct: 59  ttcttgattagagctataacttaagat 33


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)