BAC Information

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BAC

Clone NameMSMg01-160H08
Chromosome15 (Build37)
Map Location 81,855,825 - 81,856,130
singlet/doubletsinglet
Overlap geneXrcc6
Upstream geneMkl1, LOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e
Downstream geneNhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160H08.T7 (MSMg01no160_h08.b1)MSMg01-160H08.TJ (MSMg01no160_h08.g1)
ACCAG360125AG360126
length734775
length of high quality
(start - end)
308 (49 - 356)246 (73 - 318)
definitionCHROMAT_FILE: MSMg01no160_h08.b1 PHD_FILE: MSMg01no160_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:25 2005CHROMAT_FILE: MSMg01no160_h08.g1 PHD_FILE: MSMg01no160_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGGCCACCCTGGCCTACAAAGTGAGTTGTCTCAAAAGAAGA
AACAGTAATTCCCATTTGCTGTCCTTCGCTATCCCTGGTTTTAATCTTTC
TTCACACCAGGGATCTTCCTTGACTTGATGCATCTGAAGAAGCCAGGAGG
CTTTGATGTATCCGTGTTCTACAGGGACATCATCACCACCGCTGAGGACG
AGGACCTTGGGGTTCACTTTGAGGAGTCAAGCAAGCTGGAAGACCTGCTA
AGGAAGGTTCGAGCCAAGGAGACAAAAAAGCGAGTTCTGTCCAGGTGGGC
ACCCAGTCTGTTTTATCCTCGCCCCCCCTCCCTTAACAAATCGCAGGCAA
GGCATAGAATTGACCCCCCCACACAGAAACTCCCACTGGCCTCCTCGGGA
TAGCATGAACTGTCAGTTCTCTTCCCCAGCAGGGTATGTCTCCACAGTCA
CGCAGCAGCCTTCTGTGTCCTTGAGTGCTAAGTACTCTGAGCATTCCTTG
GTACCTCCTCCCCTCTCTGTCCATGGCAGATGGTAGTGACCTCTAGAGGC
ACCATTAGGTTATTTATCATAAGGAGTGAGTCAGAGACATCTAACATACT
AGTATGCTTAACAGATGCTATGTACTGACAAGTTATAAATATGTATGGGT
GCCCTTGTATTGTATAGGTTAACAGGCATTGTCT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGAGGCTCTCTTGGCCTCTGATGCTCT
CATTCAGACACCAAACAAACCACTGTGGCAAGAACAGCCCCCATGCCTGG
CACAATGGCTCAGTGGGAAAAAGACACTGGGCATGGCCTGACGACCTGAG
TCTGAACCCCAGAAGCCACATGGAGGAAGGAAAGAACTGATTCTCACAAG
GTGTCCTCTCACGTCCACACATGTGCCATGGAGTATGCACCCAACACAAA
GTAAATAATATAAATAATAATTAATAACGAGAGACCAGCCTTCCAAACCA
AAAAGCACCGTCTCTTTTCCTTCCCCCCAGTCCTCTTCCTCTGCCCCAGA
AAGTCCCTTCCAACCCTCTGAAAGTAAAATAGGTATCTGAGTAAGCCGAG
TCGTATGTGGTGTCAAGCACATGTTACTGGAGATTCCTAATGAGTTCCAA
ACGCAACAACTGGAACTTATCATTTCATATCTTCGTTCAACCATACCATA
TATGTCTAATCTTCTTACAAATAACCTACTGCTCACTTATGATGTTCCCT
CTATTGATTTTTCTACTTTTTATAAACCTGGAAAATAATTCCACTATTAA
CTAACTTCTTCCTCCTTTTTTTCTTTTATTATTTGTCTTTCTCTCTCCTA
TTCTGTTTATCCTTTTTTATTCTTCTTTTCTGGTTGTCACGTTCTTAACT
TCTTTATTTTTCATTATTCTCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_h08.b1 MSMg01no160_h08.b1 CHROMAT_FILE:
MSMg01no160_h08.b1 PHD_FILE: MSMg01no160_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:25 2005
         (308 letters)



>mm_chr15_81855623_81856330
          Length = 708

 Score =  557 bits (288), Expect = e-163
 Identities = 301/306 (98%), Gaps = 2/306 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggccaccctggcctacaaagtgagt--tgtctcaaaagaagaaacagtaatt 62
           |||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||
Sbjct: 203 gaattccaggccaccctggcctacaaagtgagttctgtctcaaaagaaaaaacagtaatt 262

                                                                       
Query: 63  cccatttgctgtccttcgctatccctggttttaatctttcttcacaccagggatcttcct 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cccatttgctgtccttcgctatccctggttttaatctttcttcacaccagggatcttcct 322

                                                                       
Query: 123 tgacttgatgcatctgaagaagccaggaggctttgatgtatccgtgttctacagggacat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgacttgatgcatctgaagaagccaggaggctttgatgtatccgtgttctacagggacat 382

                                                                       
Query: 183 catcaccaccgctgaggacgaggaccttggggttcactttgaggagtcaagcaagctgga 242
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 383 catcaccaccgctgaggacgaggaccttggggttcacttcgaggagtcaagcaagctgga 442

                                                                       
Query: 243 agacctgctaaggaaggttcgagccaaggagacaaaaaagcgagttctgtccaggtgggc 302
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 443 agacctgctaaggaaggttcgagccaaggagaccaaaaagcgagttctgtccaggtgggc 502

                 
Query: 303 acccag 308
           ||||||
Sbjct: 503 acccag 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)