BAC Information

Click to search

BAC

Clone NameMSMg01-160K07
Chromosome15 (Build37)
Map Location 66,379,290 - 66,476,313
singlet/doubletdoublet
Overlap geneTmem71, LOC100040881, Phf20l1
Upstream geneC920006C10Rik, Oc90, F930104E18Rik, LOC100040835, Kcnq3, Lrrc6, LOC100040860
Downstream geneTg, Sla, Wisp1, Ndrg1, LOC100040667, St3gal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160K07.T7 (MSMg01no160_k07.b1)MSMg01-160K07.TJ (MSMg01no160_k07.g1)
ACCAG360260AG360261
length748799
length of high quality
(start - end)
315 (37 - 351)219 (77 - 295)
definitionCHROMAT_FILE: MSMg01no160_k07.b1 PHD_FILE: MSMg01no160_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:39 2005CHROMAT_FILE: MSMg01no160_k07.g1 PHD_FILE: MSMg01no160_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,476,003 - 66,476,313)(66,379,290 - 66,379,508)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAA
CAATGATTTTAGGTAAGAATAAAAGGAAAAACAAATCTTACCTGATACTT
CTCACAACATATTTGCTTCTCCAAAGTTAATTCATTCTCTCAAAGAAATG
TGCTGCCCTCTACCTGATAATAGGCCTTAACCAATTATTGGTTGGTTCTA
TAGTAACTGGGTATGTGCGTATAATCTGATATATTCTTTAAAGACCTAAA
TTTAAGAATTAGCCTTTTCATTCCTTGACAAATAAGCAGAGTGGAACATT
TAACATAAAATCAATGAAGTACTCAATTTCCTAGTTGCTATCAAAGTGAT
TANATTTTATCACCCCCCCCCACCCGTTCATTATTGGAAATGCTTGGGAA
GAAAAACCCCCCGCATAATGAAGTATTCTTGGATATTGGAGCCTTTGTAT
TTTATCATGACACATTCTTGGCATGAGACTTAAGTCTAACCGTGAACTTC
ACTCCTTTTTGTATACAATTTAAACTCGTATCTTGAATATGTTGTATACT
GCATTTTTAGTGAGCCTGTATTTTGACAGCGATCCTGCTTACATGATATA
AGGTATGAACTTTCTACTACGGTAGCCTGTACTCCATACATGCAAGATTT
TCAGACTTTGTGTGGTAACCCTGAGCCTGTATTATAATACTGTGCATTAT
TTTTATCACGGTGACCAGAAACGAAATTCTCTCTGAGCTCTCGAACCC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGGAGTGTTCTAACTAGGCCA
TATTTCCAGAGAAAAACAAATTGCTGATAAATCAAGAGGTCTTGGGTAAA
ACCGGAAACCAAGACGTCTGAGGAGACGTGATTACAGCTGACAGCAGAAA
TGAGAGCTTCCCAACTCTTGAATGCAACCAGGTTGACTAATTACTGATTT
TTTGGAAGGGGTGGTTTAATTTGTTATATTTAGAAGATATTTGACACCCA
TGACAATTCTAATAAGACTTCTTTTTTTTGTGTCCTATGGCTGTGGACCA
AGGGAGGTTTTTGAATAGTTTCCCCAGGACGGACCCCCAGAAATATATTT
TATTTTTTTTTTTTGGTGTTCCCCCCCCCCAAAAAAAAAAAAATAAAATT
TTGGGTGGGGTGTTGCTTTTTTTTTATTCCTATATCCTCCTCCTCTAACT
TCCCTTCCCTCTTTTTCTCTTTTTCCTCCCTATCTCCCACTTCTTTATTC
CCTTTCAATCCCCTCTATTATGTTCCCCCTTCTTTATCTGTTCTAATCTC
CTCTTTTATTTATTTTTATTTTCCGCCTCTCTCTATATTTTTTTTTTTTC
TTTTCCCTCTTTTATTTCTCTTCTTGTTCCCTCCCTTCTTCAACATTTAT
TTTATTCCCTCTTCCCTTCCTTCCTCCTCCTATTCATCTCAATATTTCCT
GCCCGTCCTTTATCTCTACCCATTTAATTATTTCTCTCTCCCCTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_k07.b1 MSMg01no160_k07.b1 CHROMAT_FILE:
MSMg01no160_k07.b1 PHD_FILE: MSMg01no160_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:39 2005
         (315 letters)



>mm_chr15_66475799_66476513
          Length = 715

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaacaatgattttaggtaagaataaaaggaaaaacaaatcttacctgatactt 64
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 515 gaattcaaaacaatgattttaggtaagaataaaaggaaaaataaatcttacctgatactt 456

                                                                       
Query: 65  ctcacaacatatttgcttctccaaagttaattcattctctcaaagaaatgtgctgccctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctcacaacatatttgcttctccaaagttaattcattctctcaaagaaatgtgctgccctc 396

                                                                       
Query: 125 tacctgataataggccttaaccaattattggttggttctatagtaactgggtatgtgcgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tacctgataataggccttaaccaattattggttggttctatagtaactgggtatgtgcgt 336

                                                                       
Query: 185 ataatctgatatattctttaaagacctaaatttaagaattagccttttcattccttgaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ataatctgatatattctttaaagacctaaatttaagaattagccttttcattccttgaca 276

                                                                       
Query: 245 aataagcagagtggaacatttaacataaaatcaatgaagtactcaatttcctagttgcta 304
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aataagcagagtgggacatttaacataaaatcaatgaagtactcaatttcctagttgcta 216

                      
Query: 305 tcaaagtgatt 315
           |||||||||||
Sbjct: 215 tcaaagtgatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no160_k07.g1 MSMg01no160_k07.g1 CHROMAT_FILE:
MSMg01no160_k07.g1 PHD_FILE: MSMg01no160_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:39 2005
         (219 letters)



>mm_chr15_66379090_66379708
          Length = 619

 Score =  400 bits (207), Expect = e-116
 Identities = 216/219 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctggagtgttctaactaggccatatttccagagaaaaacaaattgctgataaatcaag 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 ttctggagtgttctaactaggccatatttctagagaaaaacaaattgctgataaatcaag 260

                                                                       
Query: 61  aggtcttgggtaaaaccggaaaccaagacgtctgaggagacgtgattacagctgacagca 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggccttgggtaaaaccggaaaccaagacgtctgaggagacgtgattacagctgacagca 320

                                                                       
Query: 121 gaaatgagagcttcccaactcttgaatgcaaccaggttgactaattactgattttttgga 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 gaaatgagagcttcccaactcttgaacgcaaccaggttgactaattactgattttttgga 380

                                                  
Query: 181 aggggtggtttaatttgttatatttagaagatatttgac 219
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggggtggtttaatttgttatatttagaagatatttgac 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)