BAC Information

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BAC

Clone NameMSMg01-160M01
Chromosome15 (Build37)
Map Location 44,365,059 - 44,365,343
singlet/doubletsinglet
Overlap genePkhd1l1
Upstream geneLOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1, Eny2
Downstream geneEbag9, 5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160M01.T7 (MSMg01no160_m01.b1)MSMg01-160M01.TJ (MSMg01no160_m01.g1)
ACCAG360337AG360338
length816720
length of high quality
(start - end)
---287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no160_m01.b1 PHD_FILE: MSMg01no160_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:48 2005CHROMAT_FILE: MSMg01no160_m01.g1 PHD_FILE: MSMg01no160_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAGNNNNNAAGGGNNNNNNNNAACCCCCCGGGACCGCCCACGAAAANNN
NCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCCGAANNNGN
NGGNGNGAANNNNANNNNTTGCCAGGAGGAGAGAGGGNAAAAAANAAAAN
AANNNNNAANAAAAAANAGNGGGGAGTAAACCCCCAAAGAAGAGGGAGAG
GANAGNAGGAGAAANNNGGAGAAANNNNNNAAGGAGGGAAAAGAAGAAAN
NAANGGNNAANNNAAGAAAAANANAAANNAGAGGGAANGGGGAANANGNA
NAGGNGNGAAAATATTGGNNNNNNNANNNNGNNCNNNNNNAAANNGAGNA
AGGNAAAAAAANAAGGAGGNANAANAGTTTTTTTTTTANANANGNNGANA
ANANAGAGAAAGGAGNNGAAANATGGCACAANNNNNANGNNGNAANGGAA
ANANNANNNNNNAAGAAANAGNANNAGAGANAGNNANNNAAGGNGNANAN
GNGNGGGNGNGNGNGNGNGNGNGNGNANGNGNNNNNNNNNNNNNNNANNN
NNNNNNNNNNNNNNNNNAANAAAAANAAAAGAAAAAAGAAAGGAGAGAAA
AAAAAGGAGAGGAAGAGGAAAGGAGAAGAAAAAAAAAAAAAAAAGGAAAN
AAAAGAAAANAAGAAAAAAAAGAAAGGAAAAAAAGGAAAAAAANAAAAGG
AAAAANAAAAAAAANAAAAAAAAAAAAAAAGAAAGAAATAAAAGAANAAA
AAAAAAGAAAAAGAAAAAGGANAAAANAGAAAAGGAGGAAGGAGAAAGAG
AGGGGAGAGGGGAAGN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGGATCAAATCCCATGCCTGTC
ACCGTCAAGGTTTGCCCACCACCCAAGCTCCCTGAGGAAGATAATAAATA
CAAGGAGAACATGAACAAATGTGCAGGAAATGTCCCCTCTGCAAACATTT
GCTTTAGCTAACCTCCCCCCAAAAGTATCTTTATGTAACTTTCTTAGATC
TGAAATTTATTACATTATTAATAAAACCAAATATCTTTTAATTGTAGTGT
TTAAGATTTTCAATGAATAAATGTGGCTTCTGTTAATTTAAGTAAATAAT
TTTGGAAACTATTTTTTATTTTACACCACACTGTCACAAAGGATTTTAGA
GTACTCAAAACATACATGAAACATTATTACTTGAGTATTTTCATCACACT
TTTTGACATTTTCTTTTTCTTTTTTTCCATTTTTTATTAGGTATTTAGCT
CATTTACATTTCCAATGCTATACCAAAAGTCCCCCATAGCCACCCCCCCC
ACTCCCCTACCCACCCACTCCCCTTTTTGGGCCCTGGCGTTCCCCTGTAC
TGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGG
CCGCCTAGGCCATCTTTTGATACATATGCAGCGAGAGTCAAGAGCTCCGG
GGTACTGGTTAGCTCATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_m01.g1 MSMg01no160_m01.g1 CHROMAT_FILE:
MSMg01no160_m01.g1 PHD_FILE: MSMg01no160_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:48 2005
         (287 letters)



>mm_chr15_44364859_44365545
          Length = 687

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catggatcaaatcccatgcctgtcaccgtcaaggtttgcccaccacccaagctccctgag 60
           |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| 
Sbjct: 485 catggatcaaatcccatgcctgtcacagtcaaggtttgcccaccaccaaagctccctgaa 426

                                                                       
Query: 61  gaagataataaatacaaggagaacatgaacaaatgtgcaggaaatgtcccctctgcaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gaagataataaatacaaggagaacatgaacaaatgtgcaggaaatgtcccctctgcaaac 366

                                                                       
Query: 121 atttgctttagctaacctccccccaaaagtatctttatgtaactttcttagatctgaaat 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atttgctttagttaacctccccccaaaagtatctttatgtaactttcttagatctgaaat 306

                                                                       
Query: 181 ttattacattattaataaaaccaaatatcttttaattgtagtgtttaagattttcaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttattacattattaataaaaccaaatatcttttaattgtagtgtttaagattttcaatga 246

                                                        
Query: 241 ataaatgtggcttctgttaatttaagtaaataattttggaaacta 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ataaatgtggcttctgttaatttaagtaaataattttggaaacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)