BAC Information

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BAC

Clone NameMSMg01-161A18
Chromosome15 (Build37)
Map Location 31,295,356 - 31,295,683
singlet/doubletsinglet
Overlap gene5730557B15Rik
Upstream geneCtnnd2, 9630009A06Rik, Dap, EG625796
Downstream geneRopn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231, Tas2r119, 0610007N19Rik, Sema5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161A18.T7 (MSMg01no161_a18.b1)MSMg01-161A18.TJ (MSMg01no161_a18.g1)
ACCAG360554AG360555
length1,2331,214
length of high quality
(start - end)
415 (44 - 458)328 (70 - 397)
definitionCHROMAT_FILE: MSMg01no161_a18.b1 PHD_FILE: MSMg01no161_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:13 2005CHROMAT_FILE: MSMg01no161_a18.g1 PHD_FILE: MSMg01no161_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATGCACTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTATATCTAATGTTGAACACTAAATTGTTTCAAAACATATAAAATAAT
CTTTGGAAGTTAAGCATAGTAAAACAGCATAAAATATTAAAAATGAATCA
TTAAGTAATATATTCAAAAGCCCTTATATGATACCACATGATTAGTGAAA
GAGTATTTAAAACACATTATATATCTGTGTACACTCTCTAACAATCAGTT
TACTTAAAAAGATTATCAGTGTTTCTAGTAGAGAAATTATTTTATCAGTA
AGTATATTTTAAAAATTTCAAAATAGGAAAAACTATTAAGAAAATGCTGA
TTTCAAGCACAGTGAGAAAAATTATCAATATTTTCATGATGTTTGTAGAA
CATAATTTTAATATTTTCAGCTGTTAATATTAAACAAACAGAATAATTAT
TTAATTTTTTTTTCCCCCCCCCATATCTCCCTTTTCATTTCTGATTGAAT
TAATTTGGATACTGTCTCTGTGCCCTCTCGTTAATCTGGCTAAAGGTTTA
TCTATCTTGTTGATTTTTCTCAAAGAACCAGCTCCTGGTCTTGTTGATTC
TTTGTATAGTTCTTTTTGTTTCTATTTGGTTGATTTCAGCCCTGAGTTTG
ATTATTTCCTGCCATCTACTCCTCTTGGGTGTGTTTGCTTCTTTTTGTTC
TAGAGTTTTCATGGGTGCTGTCAAGCTACTAGTGTAAGCTCTCTTCACCT
CCTTTTTGGAGGCTCTTAGAACTATTAGTTTTCCTCCTACCACTGCTTTC
ATTGTGTCCCATAAGTTTTGGTATGATGTGCCTTCATTTTCATTAAATTC
TAAAAAGCCTTTAATTTCTTTCTTTACTTCTTCCCTTGACCAAGTTATCA
TTTGAGAAAAGCGTTGTTCAACTTTCCATGTGTATGGGTGCTTTCCGTTT
ATTTTTTGTGTGGATTGAAAAACAACCCCTTATCTGTTGTAATATTGAAA
AGGGAACAGGGGGGGTTTTTCCCCCTCCCTGTGATTGGTGGAGGGCTTTT
TTTTTTACCGATTATATTTTCTCCCAATAAAAAAATATGTGAACGGGCGT
AAAAAAAAAAAAATTTTTCTTTTTTTTTATTGACATTTTCTTTTATTAAA
CTTTTTTTTATCCCTTTTGGTTCTAATATTCCTCTTTAATTTCCTTTCTC
TGNTCCTTAATTATACTCTAATTTTCCTTGCTT
NNGGGATCATGGAGGCGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTCTGTCACTCACAAGCCTGCTGTGCACTG
TGCACGGTTTAACTCGTTCTCAATTTCCCTTGCTGTTTTCAAACGTGGTT
GCTCGTTTGGGATTTTTTTTCCTCTCTCCGGAAAGTATAATAAAGCTGGA
CGGCCAACGGCCACTCACAGGTGTACGCTTCCAAGCAGACAAGGCTTGCT
CAGGAAGGGGGAGGTTTCTAACGCCAGCGCCTAACCCAGAAAAGTCGCTT
ACTTAAACTGAAAGTGGAGCAGAGCAATAGCCCCCTGAGCCTCTCCTCCC
GCTGCATGCCAGCTGGAACAGCCACCGCGGGCACCAAGGTGGTGCTGACC
TCACCAGACCCATCTCCCTGTCACATCACAAGCACAAAACATTCCTCCTA
TTTTTTTCCCCCCCCCCCGAAAGNAGAAAGTGACACCCAAGAAAAACGCT
TGCCTAAGCCTGACCCAGACTGCAGTCAGGCACAAAACATTGCGCATATA
CAGCCCCCAGGATAAGCCAAAGGCACGGGGTCACCATATTTTCCGTCAGC
TGTGACTCCCAAGCAGAAGCACGGGCGTCCCTAATTTGTTCAAAGCTGAG
TCTGCAAAAAAACCACGGGGCCTCTGGGAACATGGAAATCAGGTGAGGTT
GTTTGTCCGCCCAGCAGAGACTAATGGGGACACGGCCACAGCGGTCACTT
TCCCATTTACTAGTCAGTGGAAACAGCTCTCCAACTTTTTTTTTTAACTT
TCTTACTATCTCTGAATCTTGGCGTAATAAACGGAGACTGCCTCCTTACT
TCCCCGCGTGCTGACCCTGGAGTGTGCCCCTACTGAGCTGCGCAACACCC
GGCCTGTCTGAAAAGTGGGTGGTGAAAGTTCATTGGCTTCAACCCGCCCC
GGTGACCGCCCATTAAAATTGGTTGGGCCCCCCCCGGGGCCCCTATGGAA
AATACTTTAAAAACCCGGGCCGGTTTTTATATATAAAGAAAATTTATTTC
CTAATCCAAATTCCACGGTTTTGAAAAAAAACTGGGTATATTAAACGGCC
AAAGTGGTGTGTGGTGGAAAAATTCCCCCAAAATGATAAAAAACTTGCTC
CTCTTGTCTGGCGATAGATAAATCTTAAGTTTTTTTATTGTTTTTACCTT
CCCCCTCTCCCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_a18.g1 MSMg01no161_a18.g1 CHROMAT_FILE:
MSMg01no161_a18.g1 PHD_FILE: MSMg01no161_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:13 2005
         (328 letters)



>mm_chr15_31295156_31295883
          Length = 728

 Score =  634 bits (328), Expect = 0.0
 Identities = 328/328 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctgtcactcacaagcctgctgtgcactgtgcacggtttaactcgttctcaatttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctgtcactcacaagcctgctgtgcactgtgcacggtttaactcgttctcaatttccc 260

                                                                       
Query: 61  ttgctgttttcaaacgtggttgctcgtttgggattttttttcctctctccggaaagtata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgctgttttcaaacgtggttgctcgtttgggattttttttcctctctccggaaagtata 320

                                                                       
Query: 121 ataaagctggacggccaacggccactcacaggtgtacgcttccaagcagacaaggcttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaagctggacggccaacggccactcacaggtgtacgcttccaagcagacaaggcttgc 380

                                                                       
Query: 181 tcaggaagggggaggtttctaacgccagcgcctaacccagaaaagtcgcttacttaaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaggaagggggaggtttctaacgccagcgcctaacccagaaaagtcgcttacttaaact 440

                                                                       
Query: 241 gaaagtggagcagagcaatagccccctgagcctctcctcccgctgcatgccagctggaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaagtggagcagagcaatagccccctgagcctctcctcccgctgcatgccagctggaac 500

                                       
Query: 301 agccaccgcgggcaccaaggtggtgctg 328
           ||||||||||||||||||||||||||||
Sbjct: 501 agccaccgcgggcaccaaggtggtgctg 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)