BAC Information

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BAC

Clone NameMSMg01-161E20
Chromosome15 (Build37)
Map Location 10,453,068 - 10,453,440
singlet/doubletsinglet
Overlap gene4930401A09Rik
Upstream geneIl7r, C230086A09Rik, Prlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1
Downstream geneEG666579, Rai14, C1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161E20.T7 (MSMg01no161_e20.b1)MSMg01-161E20.TJ (MSMg01no161_e20.g1)
ACCAG360741AG360742
length1,2181,248
length of high quality
(start - end)
377 (76 - 452)381 (72 - 452)
definitionCHROMAT_FILE: MSMg01no161_e20.b1 PHD_FILE: MSMg01no161_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:45 2005CHROMAT_FILE: MSMg01no161_e20.g1 PHD_FILE: MSMg01no161_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAACTATGCGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTCTTCTTGAGGCAACTATACCTTGGGTTAGAGAATTTAGAATCACAGT
TCATAGCACCAGACCAAACCTCGACACTGAGCTTAAAGTGTTCTGGATTT
AAAGGACTTCATGTATAAGGATAAAAGCAAATTCTTTATTGATATCATAA
GCAACAGCAGTCTCATGTGTTCTCCGCAGTTTAATCTGAGACTTCTGTGA
GCTCTTGTTTCTGAACTGTGACACAAAAACAGACCATCTATAGCTAATAA
ACAAATGAGGAACCATGTTTAAGGGTTCATAACATGTACCTGTTTTTCAC
CATTTTCGATGAGCCACGTACAAAAGTCTTCAATGGCGGTAAGAGTTTCT
TATTCTTCTGAGCCCAGAGTTTGGTATGTACTAATACTTCTTATAAAATA
TATTTTTCCCCCCCCCCCAAAAACGGAAAGAATGATTTAAAGAAAACTTC
AAGCCTTCACAAATGTTTATTATCAGTTTGGGCTCCACTAGCATCTTCAT
GCATATAGTCTATGTCTGCTCCTGTCCCAGGCTCCACAAAGATCCTCAAA
AGGTCCAAGGCAGGACTGGATGGTTTTCTCAAGATGGAATGCATGCATGC
ATTTCAAGTAGAGGGAAAGGCTTCTGTCCAAATAGTCCCTGTTATCCTAA
AGGTCAAAATAATTACATTTAGACTTCCAGGAGTATTGAAAGGCTATACT
CCTCCACTAAAACTCTGATAGACATTTTATGTGTTTAACACACATTAAAT
TGTATTTTTATATACTGAATATACTTACATAATTATAGACGTATGTATAC
AGAGGTATGATTCGCCAAGTTTTACCTTTTAAGAATGTACGGTTCCAGCC
AGATTATAGCAGTTGACTTCTGTAAATCTATCACTTCACAAGCTGAAGCA
GGAAACATTTCCCTTGAGTTTGAAGCCCCTCGGAACTATGTTTTTAAATT
CAGGCCCCCCATTTGTTTTTTCAAAATGAAAATTTGTCCCCCTACAATGT
CCTTGGGTGCTCTTCCCCCCCCCCCTGATAATACTTCTTTTATTTTTTAT
ATCTTACCTAATATATTATTTCTCCCATCCTCTTACCTTACTTTATTTTC
TTATATTCTTTTATTATTTCATCTTTTCTTCTTATTCTTTANTTCTCTTA
TTAAATATCTTTTAATTT
NNNGGGTCATGGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCAGCAAGCCACACCCCAACCACAGCAAA
GAAAAGAGTCGGGCGTGACTCACAGACGCCCCAATCTTATATGCTTGGTA
ATTTAAGTCTAAAACACTGAAGCAAAGTAAAGTGTTTATTGCCAAGGGAC
TGGAAGTGAGGAGATGGACTGAGTAAATGCCAGTCGAAAGATACGTTTCT
GCTTGACAAGAGGAATGGACTCCAGAGCTCTGTTGTGTGGCCTGGTGACT
CCTGTAAATGGCAGTCTGTGTACTTGACATTACCAGGGCTTAAAGGTTCT
CATCGTAGTACAGTGAGAAGCGTGTGAAGTAACGGGGGGGTTAATTGGCC
CTTTGTCTGTTCTGCAATGTATATGTATTTCTAAATATCACAGTTGAGGT
TTTTTTTTTCCCCCCCCCCTCATATGTNAGNTAAATTATAAAAAAAGGAG
AGGGGAGTTCTCGTTTTTTTGTTTTTTGTTTTCTGTTTTTCTTCTAATTT
GTACGTGTCAGGGGGTCTGCGGTTGCGTATCGTGAGTGGAAGAGCTTATG
TTCCCCACTGCCACCCAGCTGCTCACTGACAGTCAGCTCAGTCCAACCCT
ATCTCCTCCGCCTCCTCATAGTCCAGTGTCGAAATCCAATCAGGGGAGAA
AATCTGTAGTGTTTACTTGGCAAGTTACATTCATTCATTTTTTTTCTCCC
CCTCTCTGCTTAGGAATTGACAAATTTCCTCTTGATTTTGAAAAGGTTGA
TTGGACTATACCTTGAATAGTCTGTATGTCAAGTTTTCGTAAAAACGATT
TAAGTATCTCATTGATTCATAGTCTGGGTGGCCCCACCGGGCTCCTTGGT
CCTTTTTAAAAATCTCTTGTTCCATTCTCTGAAAGGATTTTGGTTAAATT
TATTTCTAATTTCGAATCTCTTTTCCGTCTTTCTATAATGTGTTGTTCTG
TAAATGGACTCATTTTTAATGTGTTTGTTTTGGTGTCTCATCTTTTCAAT
ATTTCATTTTTAATCTCTTAAATAAAACCTTCTCTCTTGTCTTTTTCATA
AAATATTTATTTATATTTGTTTATATTTCTTAGATTTTCTCTATCTTTTT
TTCTATTTGTTTATTATTTATAACTTTTTATTTCTAATCTGTTTTTATAT
TTTACTTCCTTCTTTTATTATAATTCTTTACTCTCTCTTATCTCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_e20.b1 MSMg01no161_e20.b1 CHROMAT_FILE:
MSMg01no161_e20.b1 PHD_FILE: MSMg01no161_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:45 2005
         (377 letters)



>mm_chr15_10452864_10453640
          Length = 777

 Score =  698 bits (361), Expect = 0.0
 Identities = 370/373 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   tagagaatttagaatcacagttcatagcaccagaccaaacctcgacactgagcttaaagt 64
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 tagagaatttagaatcacagttcatagcaacagaccaaacctcgacactgagcttaaagt 264

                                                                       
Query: 65  gttctggatttaaaggacttcatgtataaggataaaagcaaattctttattgatatcata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttctggatttaaaggacttcatgtataaggataaaagcaaattctttattgatatcata 324

                                                                       
Query: 125 agcaacagcagtctcatgtgttctccgcagtttaatctgagacttctgtgagctcttgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcaacagcagtctcatgtgttctccgcagtttaatctgagacttctgtgagctcttgtt 384

                                                                       
Query: 185 tctgaactgtgacacaaaaacagaccatctatagctaataaacaaatgaggaaccatgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctgaactgtgacacaaaaacagaccatctatagctaataaacaaatgaggaaccatgtt 444

                                                                       
Query: 245 taagggttcataacatgtacctgtttttcaccattttcgatgagccacgtacaaaagtct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taagggttcataacatgtacctgtttttcaccattttcgatgagccacgtacaaaagtct 504

                                                                       
Query: 305 tcaatggcggtaagagtttcttattcttctgagcccagagtttggtatgtactaatactt 364
           |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcaatggcggtaagagtttcatagtcttctgagcccagagtttggtatgtactaatactt 564

                        
Query: 365 cttataaaatata 377
           |||||||||||||
Sbjct: 565 cttataaaatata 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)