BAC Information

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BAC

Clone NameMSMg01-161O03
Chromosome15 (Build37)
Map Location 67,464,316 - 67,464,698
singlet/doubletsinglet
Overlap genenone
Upstream genePhf20l1, Tg, Sla, Wisp1, Ndrg1, LOC100040667, St3gal1
Downstream geneZfat1, LOC100041000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161O03.T7 (MSMg01no161_o03.b1)MSMg01-161O03.TJ (MSMg01no161_o03.g1)
ACCAG361172AG361173
length1,1471,219
length of high quality
(start - end)
386 (475 - 860)216 (235 - 450)
definitionCHROMAT_FILE: MSMg01no161_o03.b1 PHD_FILE: MSMg01no161_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:00 2005CHROMAT_FILE: MSMg01no161_o03.g1 PHD_FILE: MSMg01no161_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGAAATNNNNAAGACATTGCGCGCTAAGACTCCTATGGGAGAGGATCCGC
GGAATTCTCATAATTAATCTTAAGACATCACACCATTTCACACAATCTAA
TGGGCATGTATGTTTCTATGATAAACTATTATCAAGATAGACCAACCCTG
CATTAATACATAGCATAATCAAAGCAGAGTAGAACTAACCCAAAAGATAA
GGTAGAAAGTTAAACCAAAATAGATGTTATAATTTGAAGTTTGAAAAAAG
TGAAACTACTAGTCATGTGAATAACGAAGATTATATGACTATTCGTGGTC
AGTGGTAGTGATCTTGAGTGGAATATCTTAAACTCTGTTCCAAAGTACAT
GTCATATGAATAAAACTTTCATGGCATGTGATTGCTTTCAGAAAGAGAAA
GAGGGAGAAAGGGAGTAAGGGAATTATATATGCACATATATTGTATATAT
AATATATAATATTTATATACGACATTTTATATATATGTATATATATAATA
TATCCTGTTCAAAGCACATGCATTGTGTAAAATCTAGAGTCTAAAAGTTT
GATAAATTTGAGAGTTCAAACATGTTTGCACTGGAAATGAACAAACAATA
TAGAAATAGGACAATATTTAAAAAATAGTGAAATTAAGAAAACAAGAAAT
CAACTATTTAGCATAGAGAGATTAAAATCGATAAGGATAAAGCTATTTAA
TGGAAATCACTGGCCATGAACATGAATTTATTAATGTTTTAAAAATAAAA
ATATAGGGTGGATCCCCAAGTGGGGCAGTCTCCGGATTGTCATTCCTTCA
GGCTCTGCTCCAAACTTTGTCTCTGTAACTACTTCCATGGGTATTTTGTT
CCCCATTCTAAGAANGAATGACATATCCCCACTTTGGNCTTCCTTCTTCT
TGAGTTTCATGTGTTTTGCAAAATGTATCTTGGAATTCTAAAATTTAAGG
GGTAAAATCCCTTTTTCAGGGAGGGCGATCATGGGGGGGTCCTTTGAGAA
GGGGGTACTTTCCTCCGGGAGGGGGCCTCCCGGAAACCTTCCATTTGGCC
TAAAGAATTTCTTAAAATCCCTTGGTTTTTAAAAAAAGGAAAAGGGGACC
CCCCTTGTGGCGAAAGGGTCAACAAATTTTTTGGTTCCCTTTCCCCC
NNNTTAATGAAGGNAGNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATATAGGAACATCACAGGGAAATCTCCA
CAACAGAACACAGAAAAAGGAAAAGAGACTCTCAAACAGGGAAAAAACAA
GGGAAAAAATGGGTACACCTCAGTTAAAGAAAATACTAAACCTAAAAATA
AAAAATTAGGCACAAAACATTTATGGAATCTGGAATATTATAAAAAGGAT
AATTTTATGAATAATAGGAATAGATAAGGGAAAGAAATGTAGGTTAAAAC
AAAGAAAAATATTCTTTAAATATTCAAAACAGTAAATTTCTTTAACATAA
ACAAGAAAATGCCTATCAGGGAACAAAAAAGTATGCAAAACAGCAAATAT
GTTGTACCACAAAAGAATTTCTCTCAGCATATAATAATTAAAACAAACAC
TGACTGTATTTTTTTACCCCCCCCCTCAAAAAGCACAGGGGAAAAGGAAA
AATAATATATAAAATCTGACCTATTAGTATAACACCTAACCAGAAAGGCC
AGGACAGATGTTCTGCAAATTCTAAAAAACCAAAGATCACAGCCCAAACT
CCCACATTCAGCAAAACTTCCAATCACAATGGAGAGGAAAGAATGATATT
TCATAGTAAATCTAATTTTAAACACTATCTTTCTATAAATCCAGCCCCGC
AAAAGGCAGCAAAAGGAAAATCTCAATCTGAAGTGGTTAACCATACCCAA
GAAGGCACATGGAATAGATAATATCAAACCAGCAAATTCTAAGAGGAAAC
ATGGAAACCCAACCACAACAAAATCATGGGAACTAAAGGACACTGTTCAT
TGTTAATTTGCAATATTTACATCCTCATTTACCCATTAAAAGGACAAAGA
CTAGGAGAACAGATTTCAAAACAGGATCCATCCTTCTGATCCATCCTTCT
TACCTTCCAGCATAAACTTGATTTCAGGGTAAAAAGAATTTAAAAAAAAA
AGGGATATGTGCCCCCAGCCGAATTTTGTAAGCAGGAAAATATTACCCCT
TTTTAATATTCTTTATAAAAAAACTTTCCAATCCAAACTAATTCAAAAAA
AATAGGGGGGGGACCTGAAATGTGGGTTCCTTTTGTAAAAAGCCCCCCGG
AAATTTAAATTCTTAAAAATTTTTTTCGCAAAACCACCGGGAACTCCAGG
TTCTTAAAAAAAAACCGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_o03.b1 MSMg01no161_o03.b1 CHROMAT_FILE:
MSMg01no161_o03.b1 PHD_FILE: MSMg01no161_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:00 2005
         (386 letters)



>mm_chr15_67464196_67464981
          Length = 786

 Score =  681 bits (352), Expect = 0.0
 Identities = 376/384 (97%), Gaps = 2/384 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   tatat-atatgtatatatataatatatcctgttcaaagcacatgcattgtgtaaaatcta 62
           ||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 503 tatataatat-tatatatataatacatcctgttcaaagcacatgcattgtgtaaaatcta 445

                                                                       
Query: 63  gagtctaaaagtttgataaatttgagagttcaaacatgtttgcactggaaatgaacaaac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagtctaaaagtttgataaatttgagagttcaaacatgtttgcactggaaatgaacaaac 385

                                                                       
Query: 123 aatatagaaataggacaatatttaaaaaatagtgaaattaagaaaacaagaaatcaacta 182
           |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 384 aatacagaaataggacaatatttaaaaaatagtgaaattaagaaaacaaaaaatcaacta 325

                                                                       
Query: 183 tttagcatagagagattaaaatcgataaggataaagctatttaatggaaatcactggcca 242
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttcgcatagagagattaaaatcgataaggataaagctatttaatggaaatcactggcca 265

                                                                       
Query: 243 tgaacatgaatttattaatgttttaaaaataaaaatatagggtggatccccaagtggggc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgaacatgaatttattaatgttttaaaaataaaaatatagggtggatccccaagtggggc 205

                                                                       
Query: 303 agtctccggattgtcattccttcaggctctgctccaaactttgtctctgtaactacttcc 362
           |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 agtctccggattgtcactccttcaggctctgctccaaactttgtttctgtaactacttcc 145

                                   
Query: 363 atgggtattttgttccccattcta 386
           ||||||||||||||||||||||||
Sbjct: 144 atgggtattttgttccccattcta 121


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)