BAC Information

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BAC

Clone NameMSMg01-162A02
Chromosome15 (Build37)
Map Location 97,259,255 - 97,259,902
singlet/doubletsinglet
Overlap genenone
Upstream geneSfrs2ip, Slc38a1, Slc38a2, LOC667941, LOC546651, Slc38a4, Amigo2, BC038822, LOC100043354
Downstream geneLOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162A02.T7 (MSMg01no162_a02.b1)MSMg01-162A02.TJ (MSMg01no162_a02.g1)
ACCAG361260AG361261
length699699
length of high quality
(start - end)
655 (45 - 699)291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no162_a02.b1 PHD_FILE: MSMg01no162_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:17 2005CHROMAT_FILE: MSMg01no162_a02.g1 PHD_FILE: MSMg01no162_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACCCTGCATACAACCCTTGCTGATCTCTAATTTTTAAAATCTCAT
GGATTTGAAATAATCAGGAAACACAATAACTGAATGTCAAACTTTCCCCT
TTAAAGTATAATATGATTATTAATTGTATTATTTGAATTAAACTATTAGG
CTAAGCTTTTGAAATAATTGGCAATCAGGGCATCCATTAGCAATGTATAT
ATGTATGTATATATATACATAGATACGCAGGAGTATGTGAATCTGGGTTT
TTAATCTGGGCCAAATCAAATATATAGTAATTAAGCTTGGTTATTATACT
CCATGCCTGAGGACCAGGATTCTGCTATTCTAGGTCAGTATCCTTCTCTT
ATTGCCAACACGTATTTTGAGAATGCACGCGCGCGCGCGCACACACACAC
ACACACACACACACACACACACGTCTTGTTTACTTATTTTTCATAAGATC
ACGATAAACGTGTATTGACCTTTGAAATCGTAACCACACAGACAGATGCT
GGGATGCTGACACTGCACTCAGTAGATAGCTGCCACTCATTGGTAGCTGG
TATAAAAGACGGTTGGTATTCTGCACTTTGGCCCTGGAGATGAAGAACTG
AACAAGGCAGACAAACCTTTGCCTGTGTTGTATAACAAACATCCAGACG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGACCTTGAA
CTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGCATG
CGCCACCACTGCCCAGCCTCAGCTAACCTTCTTATACAGCCCAGATCACC
TGTCCAGAGATGACCCTGTCCACAGTGGACATTAAGTAACAATTAAGAAA
ATGCCTCACAGACATGACCACTGGCCAATCTGGTGGAGGCAATTCCTCAG
CAGAGAGAGGTTCCCTCCTTCCAACTGAGCCATGTTGACAACCGAAGCTG
ACTATAACAGCGTGGTTTAGATTTGCTTGAGATGTTTGGGAGACAGAGAG
AGTGGAGCTGTCCAACCTGGCATCAGGGGTGGGTGACAGTCACACTTGGC
TTCAGAGGATGTGAACTTTCCAGTGTCTCCTAGACTTTGTGTCTGCTGTA
GTCTCTGAGTTGGGGCTGGAGCAGCCCTGACGTCAACGATGACTTCCAGG
GTTCTGTGACCTCTGCTCAGCTGCTTCCTGAGCTCGGCACTTAGCACTGG
GACAGGAGACTCAAATAATGCACTTACTTTTTAGGTCTCCTAGAAGTCTT
GCACGTATATCCCTATAGTAAGCTTCTTTTGTTTCTTTTTTAATCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_a02.b1 MSMg01no162_a02.b1 CHROMAT_FILE:
MSMg01no162_a02.b1 PHD_FILE: MSMg01no162_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:17 2005
         (655 letters)



>mm_chr15_97259052_97260106
          Length = 1055

 Score = 1156 bits (598), Expect = 0.0
 Identities = 637/654 (97%), Gaps = 8/654 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaccctgcatacaacccttgctgatctctaatttttaaaatctcatggatttg 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaccctgcatagaacccttgctgatctctaatttttaaaatctcatggatttg 263

                                                                       
Query: 64  aaataatcaggaaacacaataactgaatgtcaaactttcccctttaaagtataatatgat 123
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaataatcaggaaacaaaataactgaatgtcaaactttcccctttaaagtataatatgat 323

                                                                       
Query: 124 tattaattgtattatttgaattaaactattaggctaagcttttgaaataattggcaatca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tattaattgtattatttgaattaaactattaggctaagcttttgaaataattggcaatca 383

                                                                       
Query: 184 gggcatccattagcaatgtatatatgtatgtatatatatacatagatacgcaggagtatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggcatccattagcaatgtatatatgtatgtatatatatacatagatacgcaggagtatg 443

                                                                       
Query: 244 tgaatctgggtttttaatctgggccaaatcaaatatatagtaattaagcttggttattat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgaatctgggtttttaatctgggccaaatcaaatatatagtaattaagcttggttattat 503

                                                                       
Query: 304 actccatgcctgaggaccaggattctgctattctaggtcagtatccttctcttattgcca 363
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 504 actccatgcctgaggaccaggattctgctattctaggccagtatccttctcttattgcca 563

                                                                       
Query: 364 acacgtattttgagaatgcacgcgcgcgcgcgcacacacacacacacacacacaca--ca 421
           ||||||||||||||||||||||||| |      |||||||||||||||||||||||  ||
Sbjct: 564 acacgtattttgagaatgcacgcgcac------acacacacacacacacacacacataca 617

                                                                       
Query: 422 cacacacgtcttgtttacttatttttcataagatcacgataaacgtgtattgacctttga 481
           ||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 618 cacacacgtcttgtttagttatttttcataagatcacgataaacatgtattgatctttga 677

                                                                       
Query: 482 aatcgtaaccacacagacagatgctgggatgctgacactgcactcagtagatagctgcca 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aatcgtaaccacacagacagatgctgggatgctgacactgcactcagtagatagctgcca 737

                                                                       
Query: 542 ctcattggtagctggtataaaagacggttggtattctgcactttggccctggagatgaag 601
           |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 738 ctcattggtagctggtataaaagatggttggtattctgcactttgtccctggagatgaag 797

                                                                 
Query: 602 aactgaacaaggcagacaaacctttgcctgtgttgtataacaaacatccagacg 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 aactgaacaaggcagacaaacctttgcctgtgttgtataacaaacatccagacg 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)