BAC Information

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BAC

Clone NameMSMg01-162I16
Chromosome15 (Build37)
Map Location 72,899,686 - 72,899,958
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13, LOC100041120
Downstream geneChrac1, Eif2c2, Ptk2, LOC666053, LOC100040929, Dennd3, Slc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162I16.T7 (MSMg01no162_i16.b1)MSMg01-162I16.TJ (MSMg01no162_i16.g1)
ACCAG361638AG361639
length693693
length of high quality
(start - end)
308 (46 - 353)278 (76 - 353)
definitionCHROMAT_FILE: MSMg01no162_i16.b1 PHD_FILE: MSMg01no162_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:56 2005CHROMAT_FILE: MSMg01no162_i16.g1 PHD_FILE: MSMg01no162_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAGGATCTACTCCTGAGTACTTACATAGAACCAGTAGTTCTCAA
ACTTCTGTAACCATTTAATTCAGTTCCTCATGTTGTGGTGACTCCCCCAC
CCCCAAACCATAAAATCATTTAGTTGCTACTTCAGAGCTCTGTTTTGCTA
CTGTTATGAGTCATAATGTATGATATCTGATATGCAATCCCTAATGGGAT
TGCAACCCACAGGTTGAGAACTGATGCTCCAGACCATGTCGTGGCTACTG
CTTACTTGGATTGTACATATCATCCTAAGGATGAACATTCTTGCCCCTCA
TTGTTTATCTTGCCCCCCCCCCCTCATGTGACTTGTCTTAGGCTACATAG
CTCCCAAGGCCCACACCTATTTACCCTCCAGAAGCCCTGTTTTCTTGCCT
TTTCCACAGTACACCCTTCCTCAACAGTTTCCCATCTCTCCTATACTTTT
CTTTGCTCTGATTACTTCCCATTACCTATTTTATATGTAGCAGGAGACCT
CTGGCCTGATGGAGTGGTTATCTCAGCTGTGACTCACATTTGCTATCTAA
CACCCAAATCATCCTGTGAACCCCAATGGAGCTGTCAAACTGATCTGCTG
CAGCTACCAAAGTTCTTTCACCATTTTCTTTTTTGTTTGCACG
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGTTATACTGGACATGGCGGTACA
GGCTTTAATCCAGAATTGTGGAGGCAGACACTTGCCAGTCGCTGTGAATA
CAAGGTTAGCCTGGACTACATAATCCCTTATCACAAAAAGATTCAAGTTC
TTAATTACATTACTTTATATTATGTTGTATATCAAATGTCATATATATTA
ATAATTATATATTACATATATAACATATATAATTAATATAATTGGAAATA
TGTGCTGTATATTTGTGAAGTTATTGCCTTATGATTAGAATATTGGCTTG
TATACTTTTTATCCCCCCCCCCCCCACATTAAATTAAATTTTTTAGTTTT
TTTTTTTTTTACCCACTATTTATTTATTATATGAAAGTACATTGTAGCTG
TCTTCAGACACTTCAGAAGAGGGAATCAGATCTCGTGTACGGATGGTTGT
GAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCA
GTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCAATTTTTTAGC
TTTTAAATTTTTACTTATTTATTCATGAGTATACCTGGCTGTGTCCACGG
TATCTTTAACCTAAGCCTTTAAGATTTAGACTCCGCCATATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_i16.g1 MSMg01no162_i16.g1 CHROMAT_FILE:
MSMg01no162_i16.g1 PHD_FILE: MSMg01no162_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:56 2005
         (278 letters)



>mm_chr15_72899486_72900158
          Length = 673

 Score =  507 bits (262), Expect = e-148
 Identities = 272/278 (97%), Gaps = 5/278 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggttatactggacatggcggtacaggctttaatccagaattgtggaggcagacacttgc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aggttatactggacatggcggtacaggctttaatccagaattgtggagacagacacttgc 260

                                                                       
Query: 61  cagtcgctgtgaatacaaggttagcctggactacataatcccttatcacaaaaagattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtcgctgtgaatacaaggttagcctggactacataatcccttatcacaaaaagattca 320

                                                                       
Query: 121 agttcttaattacattactttatattatgttgtatatcaaatgtcatatatattaataat 180
           ||||||||||||||     |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttcttaattaca-----ttatattatgttgtatatcaaatgtcatatatattaataat 375

                                                                       
Query: 181 tatatattacatatataacatatataattaatataattggaaatatgtgctgtatatttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tatatattacatatataacatatataattaatataattggaaatatgtgctgtatatttg 435

                                                 
Query: 241 tgaagttattgccttatgattagaatattggcttgtat 278
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgaagttattgccttatgattagaatattggcttgtat 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 673
Length adjustment: 9
Effective length of query: 269
Effective length of database: 664
Effective search space:   178616
Effective search space used:   178616
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)