BAC Information

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BAC

Clone NameMSMg01-163A04
Chromosome15 (Build37)
Map Location 90,888,272 - 90,888,575
singlet/doubletsinglet
Overlap genenone
Upstream geneAlg10b, Cpne8, EG627342, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a
Downstream geneEG635871, Abcd2, LOC545126, Slc2a13, Lrrk2, Muc19, Smgc, LOC100042529
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163A04.T7 (MSMg01no163_a04.b1)MSMg01-163A04.TJ (MSMg01no163_a04.g1)
ACCAG361954AG361955
length706709
length of high quality
(start - end)
312 (48 - 359)283 (80 - 362)
definitionCHROMAT_FILE: MSMg01no163_a04.b1 PHD_FILE: MSMg01no163_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:30 2005CHROMAT_FILE: MSMg01no163_a04.g1 PHD_FILE: MSMg01no163_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTTACCATACTTGAGGCTTTGGCTAGGCTGGGGCTCCTGTTTG
TTGACTCAGCACCTGCCTGCCTCACTCACCCTTTTGGACCTGAACCCACA
GTTTCTCCCCTGATCTGGTAAAGCCTTTCAGATCTCAGCTGATCTCAACT
CTGTGTCTCACTTAAAATCTGCTGTAAACTCTGTGTATGTCTCTGTGTGT
GTGTGTCTCTGTGTCTATCTTTGTGTGTGTATCTGTGTGTCTGTGTCTTT
GTGTATGTCTGTGTGTGTGTCTGTGTGTGTGTAGAAAGATTTGTCCTTTC
ACTTATTTTTTTTTTATCCCGGACTNTGCCCCGTCAGAATTTTGTAATTT
TTACAAATACTAAATTTCCTTCTAACAAAAAAGATGTTACTAGTCGTGTC
ATGTCTTGACACATTACGGTTCCTGCCTTCCTTACCTTCCACCTTGGACT
CCAATCTTCAGATATAAGCAAATGCTAGAAGATAGGTCCCAGGTCCTGCG
TTTGAGGCCCCCGCCTCTGACTTTGGACATTGGATGCTGTTCCAAATGCA
TGTTTCCCAGATAGCGCATGTGTTGAGTCACTAATGTCTCAAGTGTGAAG
TGATAGAAGTTAAGTTTATGATGGCCGGATCTTATATCAGGATGAATGCC
TTTGCA
ACTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGGCCATGGGGAAGGTGGG
GAGGGCGAGTGCAGCTGGTGTTACGCTGCAGAGCTGAGAATGAGACTGGG
GATTTGGTTTAGAGAAGCCCAAGGAGATCTGAAGGTCTGTAGTGAGCCTA
CCTGCTCAGGCTCCAGTTCAGGGTTTGCATGAATTCCTGAGTATGTGAGC
ATGTGGGTATTTATTCTCGTGCTTTCTCTTGGGCTCTATTCCTTCTACTG
GTTTGCCCTGCCTAAACTGATGTGATAATTTTTGTTTTATTTCAATATAT
ATTATTTTGTTTTAATATTCTCCCNGTGCGAACCCCTGAGTGAATGAATG
AATCCCTAGTCCCTGGGCCAAAGGTTAACAAAACTAAAATGTATACGCGT
TTGGGAGGGGAAAAATTCGTTTTCTCCAATGGAATGACACGGAGTACATC
ACCCACTTCACTTCGAGCCTTTTGTTCATGGTTTGTTGACCAACATATAA
TGGACTCCCTAGCGTTCTCGTGTGCTCTTATTTCCTTACAGATTGGTTTG
TTTGCTTGTTTTCCTCTAGGGTATTGCTTTATTTTGTCCCCTTGGCTTTG
GCCCCTTCTTTTTTTTTCTTTTTGCATGAGTTTTTACCGCCGCTTCCACC
CTTATCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_a04.b1 MSMg01no163_a04.b1 CHROMAT_FILE:
MSMg01no163_a04.b1 PHD_FILE: MSMg01no163_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:30 2005
         (312 letters)



>mm_chr15_90888068_90888779
          Length = 712

 Score =  580 bits (300), Expect = e-170
 Identities = 303/304 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttaccatacttgaggctttggctaggctggggctcctgtttgttgactcagca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttaccatacttgaggctttggctaggctggggctcctgtttgttgactcagca 264

                                                                       
Query: 65  cctgcctgcctcactcacccttttggacctgaacccacagtttctcccctgatctggtaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctgcctgcctcactcacccttttggacctgaacccacagtttctcccctgatctggtaa 324

                                                                       
Query: 125 agcctttcagatctcagctgatctcaactctgtgtctcacttaaaatctgctgtaaactc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcctttcagatctcagctgatctcaactctgtgtctcacttaaaatctgctgtaaactc 384

                                                                       
Query: 185 tgtgtatgtctctgtgtgtgtgtgtctctgtgtctatctttgtgtgtgtatctgtgtgtc 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtgtatgtctgtgtgtgtgtgtgtctctgtgtctatctttgtgtgtgtatctgtgtgtc 444

                                                                       
Query: 245 tgtgtctttgtgtatgtctgtgtgtgtgtctgtgtgtgtgtagaaagatttgtcctttca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgtctttgtgtatgtctgtgtgtgtgtctgtgtgtgtgtagaaagatttgtcctttca 504

               
Query: 305 ctta 308
           ||||
Sbjct: 505 ctta 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)