Query= MSMg01no163_b07.b1 MSMg01no163_b07.b1 CHROMAT_FILE:
MSMg01no163_b07.b1 PHD_FILE: MSMg01no163_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:36 2005
(685 letters)
>mm_chr15_32575402_32576485
Length = 1084
Score = 978 bits (506), Expect = 0.0
Identities = 543/564 (96%), Gaps = 16/564 (2%)
Strand = Plus / Minus
Query: 123 acttacagcctacagttccatcttataaaggtaacccaaagaaacaagagtatagaacat 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1084 acttacagcctacagttccatcttataaaggtaacccaaagaaacaagagtatagaacgt 1025
Query: 183 ttcccatgctaatccttgtaggatttcttctcccatccaaggtagaaccaaggttccctg 242
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 ttcccatgctaatcgttgtaggatttcttctcccatccaaggtagaaccaaggttccctg 965
Query: 243 ggaactgttctgggtgaggaagcacctaacatcatataaaggacactaattgtgctcact 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 ggaactgttctgggtgaggaagcacctaacatcatataaaggacactaattgtgctcact 905
Query: 303 tcctgtcacttcctgggataaaccattgaatcacagaaagggattatgttaactcctaat 362
||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 904 tcctgtcacttcctgggataa-----------acagaaagggattatgttaactcctaat 856
Query: 363 ttcagagatttcagatcttggttagcttgtcactctggaccttgaggtgtggcaggatgt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ttcagagatttcagatcttggttagcttgtcactctggaccttgaggtgtggcaggatgt 796
Query: 423 catagtagaaacagatgagcaaactttatgtcacggagaagtggaggagaagatgaaaga 482
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 795 catagtagaaacagatgagcaaactttatgtcacagagaagtggaggagaagatgaaaga 736
Query: 483 gggg--tccccagtatctccttcaagggtacaactccaatagcataactttctcacacaa 540
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ggggtctccccagtatctccttcaagggtacaactccaatagcataactttctcacacaa 676
Query: 541 gcctcacctcttaaaggttctatcacatccaatagcactgtgggctaatcttcatcacgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gcctcacctcttaaaggttctatcacatccaatagcactgtgggctaatcttcatcacgt 616
Query: 601 agacaactgcaggatatttaagacccacactatattattgaactcactaaaagtaaacca 660
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ag---actgcagggcatttaagacccacactatattattgaactcactaaaagtaaacca 559
Query: 661 ccaagcaatgtccaaaccctgctc 684
||||||||||||||||||||||||
Sbjct: 558 ccaagcaatgtccaaaccctgctc 535
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1084
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1074
Effective search space: 724950
Effective search space used: 724950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no163_b07.g1 MSMg01no163_b07.g1 CHROMAT_FILE:
MSMg01no163_b07.g1 PHD_FILE: MSMg01no163_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:36 2005
(283 letters)
>mm_chr15_32443739_32444421
Length = 683
Score = 524 bits (271), Expect = e-153
Identities = 277/279 (99%)
Strand = Plus / Plus
Query: 1 atctgtatctgcaaagcacagaagcagaaagcatgagtaaaaagtatgagtgataaatgc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctgtgtctgcaaagcacagaagcagaaagcatgagtaaaaagtatgagtgataaatgc 260
Query: 61 cagctctgtctaatgaaggacttgcttttatcatgttgaccaaggatgtatgtgacagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagctctgtctaatgaaggacttgcttttatcatgttgaccaaggatgtatgtgacagtt 320
Query: 121 atgatgaactggtattttcagacaactgggactgttttagcggatgaggggtcagcatgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgatgaactggtattttcagacaactgggactgttttagcggatgaggggtcagcatgc 380
Query: 181 tggttagtaaggtgggggagattaaagtgagatttgatgtgatgtgcctatctccaagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggttagtaaggtgggggagattaaagtgagatttgatgtgatgtgcctatctccaagtc 440
Query: 241 tgatgttatatagacagctcagttctcaggttagcttca 279
||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaggttatatagacagctcagttctcaggttagcttca 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
