BAC Information

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BAC

Clone NameMSMg01-163E05
Chromosome15 (Build37)
Map Location 43,016,310 - 43,016,589
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039268, LOC100039197, Angpt1, Rspo2
Downstream geneLOC675960, Eif3s6, Ttc35, LOC100039288, Tmem74, LOC100039309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163E05.T7 (MSMg01no163_e05.b1)MSMg01-163E05.TJ (MSMg01no163_e05.g1)
ACCAG362131AG362132
length714710
length of high quality
(start - end)
569 (51 - 619)280 (81 - 360)
definitionCHROMAT_FILE: MSMg01no163_e05.b1 PHD_FILE: MSMg01no163_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:50 2005CHROMAT_FILE: MSMg01no163_e05.g1 PHD_FILE: MSMg01no163_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACAACTTCCCCAAACTTATGGGACACAATGAAAGCAGTCC
TAAGAGGAAAATGCATAGTTCTGACCGCCTCCAAAGAGAAACTGGAGAGA
GCATATACGAGCCGCTTGACAGCTCACATGAAAGCTCAAGAACAAAAAGA
AGCAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAAATTAGGG
CTTAAATCAACCAAGTGGAAAGAACCAAACAAAGAATCAATCAAACCAGG
AGCTGGTTCTTTGAGAAAATCAACAAGATAGATAAATCCTTAGCCAGACT
AACAAGAGGGCACAGAGACAGCATCCTAATTAACAAAATCAAAAATGAAA
AGGGAAACAACAGAACATGAGCCCAATCCAAAGCATCATCAGATCCTACA
ACAAAAGACTTTACTCAACAAAGCTGGAAAACCGGGATGAAATAGACAAT
TTTCTAGACCGATACCAGGTACTAAAGTTGAATCAGGATGAGTAAGCAGT
CCCATATCCCCTAAAGAAATAGAAACTGTCATTAATAGTCTCCCAACTAA
AAAAAAAGCACAGGACCTGATGGGTTTAGTGCAGAGTTCTATCAAACCTT
CATAAGAGGCCTAATACTCCTCAAACTATTCCCCTAAATAGAATAGTAAA
AACAATTGTACAGC
NTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGCCCATATGGAACTTAA
CTATTAGGAGGTGTGGCCTTGATGCCCAAAGTGTGTCACTGTGGAGGCAG
ACTTTGAGGTCTAATGTGTCCATGGTGGGCTTAGTAGGGCAGTCTTCATT
TCTGTTGCCTGTAGACCACGATGTTGAACTATTAACTTCACCAGCTCTAT
GACTTCCTCCTTAAGTTGACTCGAATTGGCTTTTTTGTATGTAGTTTGCA
AACAAGACATCCCTGGTATATCCATAACCTGAGCTATGCGCCAAGGGAAA
AATAACAGAAATTTTTTTTTTTCCCCCACACCACAATAGAAAACTGAAGT
AACAGGTCTGTAGTGCTTCACCATATTTCAATAATACTTTGCCAATGACC
ACTCCCAGTCTGACAGATATCTCACTGTCCAATTGGTCAGGAGACACCTT
TAAATCCAGTACTCAGTAGGCAAAGGCTGGCACATCTCTTTGAGTTGAGG
CCAGCCTAATCTACATAGTGAGTTCAAAAGTAGCCAGAGAGCTATAGTGA
TAGCTGTTTCCTAACACTGAAACCACCGAAAATATTTTACTTTGCATTGC
AGCAAACATTGCTTATCCTTGAGTCTTTTACAAACCTGTGTTGTTTTGTA
TACACAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_e05.g1 MSMg01no163_e05.g1 CHROMAT_FILE:
MSMg01no163_e05.g1 PHD_FILE: MSMg01no163_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:50 2005
         (280 letters)



>mm_chr15_43016110_43016789
          Length = 680

 Score =  503 bits (260), Expect = e-147
 Identities = 275/280 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggcccatatggaacttaactattaggaggtgtggccttgatgcccaaagtgtgtcact 60
           ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 201 ttggcccatatggaacttaactattaggaggtgtggccttgatggagaaagtgtgtcact 260

                                                                       
Query: 61  gtggaggcagactttgaggtctaatgtgtccatggtgggcttagtagggcagtcttcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggaggcagactttgaggtctaatgtgtccatggtgggcttagtagggcagtcttcatt 320

                                                                       
Query: 121 tctgttgcctgtagaccacgatgttgaactattaacttcaccagctctatgacttcctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgttgcctgtagaccacgatgttgaactattaacttcaccagctctatgacttcctcc 380

                                                                       
Query: 181 ttaagttgactcgaattggcttttttgtatgtagtttgcaaacaagacatccctggtata 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 ttaagttgactcgaattggcttttttgcatgtagtttgcaaacaagacatccctggtata 440

                                                   
Query: 241 tccataacctgagctatgcgccaagggaaaaataacagaa 280
           |||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 tccagaacctgagctatgcgccaagggaaaaataacagaa 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)