BAC Information

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BAC

Clone NameMSMg01-164I22
Chromosome15 (Build37)
Map Location 12,448,504 - 12,448,742
singlet/doubletsinglet
Overlap genePdzd2
Upstream geneLOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3
Downstream geneLOC100040109, 6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686, LOC239338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164I22.T7 (MSMg01no164_i22.b1)MSMg01-164I22.TJ (MSMg01no164_i22.g1)
ACCAG362997AG362998
length749746
length of high quality
(start - end)
---241 (81 - 321)
definitionCHROMAT_FILE: MSMg01no164_i22.b1 PHD_FILE: MSMg01no164_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:27 2005CHROMAT_FILE: MSMg01no164_i22.g1 PHD_FILE: MSMg01no164_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGATGT
CCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATGGTGGCCTCTGCTGACACCGTAGTC
CCTCTTTACAGAGAGATTCTGGCCAGTTAATGCCCCATGCATTTCTGAAG
GCCGAGTCATCCCACTAACACAATCCCTACTGTGTCAGCGCCTCTCCCTG
CACACCATCGTCTATGTATCATCTTTCTTTGACTATTCAGATCATTTAGA
TTCTGCCAAGCCCATGCTTATAACCCTCACAGGGTTTTCAGAGCTCATGA
GTGTGACTATTATGCAGAAGTCTCCATTATCAATGAGCCTGGCCCTCTTA
TGAGGCTGAAAACCCCTTCAGCTCCTTCAGTCCGTTCTCTAGCTCCTTCA
TTGGGGACCCAGCGCTCACTCCAATGGATGGCTGTGAGCATCCACCATTT
GACAGGCACTGGTGGACCCTCTCATGAGACAGCTCCATCAGGCTCCTGTC
AGCACGTACTTGTTGGCATCCACAATAATGTCTGGCTTTGGTGATTGTAA
ATGATATAGATCTCCAGGCGCCGCAGTTATCTGGGTGGCCATGCCTTCAG
TGTCTGCGCCACACTTTGTCTATATGAACTAATCTGTACCATCAGAGCTC
CCAGGGACTATCTCACTAACTAAAGAGTATACATGTTGAGACCCATGGCC
CCAGCCCCGTATGTAGCACAGATCCTTGAAGACCCTTTGTTGATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_i22.g1 MSMg01no164_i22.g1 CHROMAT_FILE:
MSMg01no164_i22.g1 PHD_FILE: MSMg01no164_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:27 2005
         (241 letters)



>mm_chr15_12448304_12448942
          Length = 639

 Score =  416 bits (215), Expect = e-121
 Identities = 234/241 (97%), Gaps = 2/241 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctctgctgacaccgtagtccctctttacagagagattctggccagttaatgccccatgc 60
           ||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 201 cctctgctgacaccggagtccctctttacagagtgattctgggcagttaatgccccatgc 260

                                                                       
Query: 61  atttctgaaggccgagtcatcccactaacacaatccctactgtgtcagcgcctctccctg 120
           |||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||
Sbjct: 261 atttctgaaggccgagtcatcccacta--acaatccctactctgtcagcgcctctccctg 318

                                                                       
Query: 121 cacaccatcgtctatgtatcatctttctttgactattcagatcatttagattctgccaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cacaccatcgtctatgtatcatctttctttgactattcagatcatttagattctgccaag 378

                                                                       
Query: 181 cccatgcttataaccctcacagggttttcagagctcatgagtgtgactattatgcagaag 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cccatgcttagaaccctcacagggttttcagagctcatgagtgtgactattatgcagaag 438

            
Query: 241 t 241
           |
Sbjct: 439 t 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 639
Length adjustment: 9
Effective length of query: 232
Effective length of database: 630
Effective search space:   146160
Effective search space used:   146160
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)