BAC Information

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BAC

Clone NameMSMg01-164J12
Chromosome15 (Build37)
Map Location 47,114,547 - 47,114,864
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039438
Downstream geneLOC665130, LOC100039485, LOC100039493, Csmd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164J12.T7 (MSMg01no164_j12.b1)MSMg01-164J12.TJ (MSMg01no164_j12.g1)
ACCAG363023AG363024
length725720
length of high quality
(start - end)
321 (52 - 372)502 (82 - 583)
definitionCHROMAT_FILE: MSMg01no164_j12.b1 PHD_FILE: MSMg01no164_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:29 2005CHROMAT_FILE: MSMg01no164_j12.g1 PHD_FILE: MSMg01no164_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTGAATTTCAGAAAGAAAATAGAAGTTATTCCCTGTTA
TGATATCAAGCAATTACTTTTGTTTATTCACCATAATGAATAATAATTCA
TTAATATTCATTAATATTCTTTTTGGTAATTTATTGCATTTTTCTTAATA
CGTTGTTTATAGTTCCATTTTGTTTTCAACCTATTCATGGGAAGTCAGGT
AAGACAAACTTCTTTTTAATCATGTCAACAAAAAACAACTCAGCGCCCGA
GGTCATAATTATTTCATGCAGAAATATATTCACAGATGTTTCTCTACATT
CACCCAGGAGATTTGTTTTTATTTTAACTCCCCCCCCCCCTTTTCTCTCA
TGTTGTTAATATGAATTTTCTATTCCCCCGAAAATGAACCTTAAAAAAAT
TCCGATGGTATTTTCTGATTGTATTTTCTAACATTTACTTTACAGAAGTA
GAGCCTATAGTTTTTTAAGCAGAATATATCAGAAGTAATTTTTCTTTCTT
TTTCTGTATTACCATACACAATTAAAAACGAGATATTTTTAAATTAACAC
CATCTACCTATTGGATGAATATTCTTGAATTATTTACTCAATTGTATTTT
AGGTTGTTCAAAAAAATGAAAAACTAAGAATTTATACCAACCTTAATAGT
ACAAGTCAAGTTATGACTGCAACAT
NCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAAGAATACCGAA
TGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTC
TCAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTC
ACGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTATTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTG
GTAAGAAGGACACATGCTCCACTATGCCCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGCCTAATGGATGGTCCTGGAGGGCATCATC
CTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACT
GATAAGTGGATATTAGCCCAAAATCTAGGATACCCTAGATATAAGATACA
ATTTCCTAAACACATGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_j12.b1 MSMg01no164_j12.b1 CHROMAT_FILE:
MSMg01no164_j12.b1 PHD_FILE: MSMg01no164_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:29 2005
         (321 letters)



>mm_chr15_47114344_47115064
          Length = 721

 Score =  600 bits (310), Expect = e-176
 Identities = 316/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctgaatttcagaaagaaaatagaagttattccctgttatgatatcaagcaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ggaattctctgaatttcagaaagaaaatagaagttattccctgttatgatatcaagcaat 462

                                                                       
Query: 64  tacttttgtttattcaccataatgaataataattcattaatattcattaatattcttttt 123
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 461 tacttttgtttattcaccataatgaataataattcattaatagtcattaatattcttttt 402

                                                                       
Query: 124 ggtaatttattgcatttttcttaatacgttgtttatagttccattttgttttcaacctat 183
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 401 ggtaatttattgcatttttcttaatatgttgtttatagttccattttgttttcaacctat 342

                                                                       
Query: 184 tcatgggaagtcaggtaagacaaacttctttttaatcatgtcaacaaaaaacaactcagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tcatgggaagtcaggtaagacaaacttctttttaatcatgtcaacaaaaaacaactcagc 282

                                                                       
Query: 244 gcccgaggtcataattatttcatgcagaaatatattcacagatgtttctctacattcacc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gcccgaggtcataattatttcatgcagaaatatattcacagatgtttctctacattcacc 222

                             
Query: 304 caggagatttgtttttat 321
           ||||||||||||||||||
Sbjct: 221 caggagatttgtttttat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)