BAC Information

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BAC

Clone NameMSMg01-164J18
Chromosome15 (Build37)
Map Location 98,621,090 - 98,749,377
singlet/doubletdoublet
Overlap geneWnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l
Upstream gene4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b
Downstream geneTuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164J18.T7 (MSMg01no164_j18.b1)MSMg01-164J18.TJ (MSMg01no164_j18.g1)
ACCAG363033AG363034
length731719
length of high quality
(start - end)		319 (46 - 364)505 (81 - 585)
definitionCHROMAT_FILE: MSMg01no164_j18.b1 PHD_FILE: MSMg01no164_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:31 2005CHROMAT_FILE: MSMg01no164_j18.g1 PHD_FILE: MSMg01no164_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,749,066 - 98,749,377)(98,621,090 - 98,621,594)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCTAGCCTGGTTTGCATCGCAAGACCTGTCTCAACAAAACAA
AAGTTTCATGACATTTTTAAAAAGTCTCCTGTTTTTTTGTTTTTGTTGTG
GTTTGTTTTTTAACTATTTGTTCTCTAATACCCTAGGCCTTCCACAAAAA
TAACTGTGTGAAAGCTGTCTGGAGTGGCAGGGAAACTCCAATAACAAATA
AAAAAACGCATCGGGCAGTGGTGGCACAAGCCACTAATCCCAGCACTTGG
GAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGACCAGCCTGGTCTACAGA
GTGAGATCCAGTATTTTTATGGCTACACACACCCACACCCTATCTCGAAA
AACCAAAAATAAAAATAAACACCCACAAAAGAAAACGCTATGGGCCTTTG
GGTTACAGGCAGCCGTCCCTTCAGAAGACCCCGTGGTGCTTACATCTTCT
CGACGGGCTGACCTGATCCCAACCTTATTCGTTTAAACTAAAATCCTGAC
GGATACACATCCTGGAACCCTCACATCTCAGCCGTGGACCACAAGGACTC
TTAGTTTTAGAACAGCTTCGACAGGCCAAAAACATCCCGCCTCCTTTCCC
AGAATGTCCTATCAGCGCACTCCTAGCGATGACCGACAGTCTACGAGGAA
CCAGTAAGTTCCGCTCCTCTGAAGAACCCGT

NCCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAGTTTTTCAAGGTGGGC
AAGGCTGCAGGTGGGGTTTCTCCTCAGGGGCTGACTTGAAGAAAGGAAGA
GCTAAGGTAGCCATGCCTTTTCTGTCCACTCACTAGACTCTGGAGCTCAG
GGCCAGGCAAGGACAGGGTGGTACAGCCTGTATGGTTAGGATGCAGGCCC
CCTCCCCTGGACTGAACCCTTATGCATCCCGCCAGGGGCATCGTGAACAT
AGCCTCCTCCACGAACCTGTTGACGGATTCCAAGAGCCTGCAGCTGGTGC
TCGAGCCCAGTCTGCAGCTGCTGAGCCGCAAGCAGCGGCGACTGATCCGA
CAGAACCCGGGGATCCTGCACACCCCGAGTGGAGGGCTCCAGAGCGCCGT
GCGAGAGTGCAAATGGCAATTCCGAAACCGCCGCTGGAACTGCCCCACTG
CTCCGGGGCCCCACCTCTTCGGCAAGATCGTCAACCGAGGTGGGTGCCCA
CGAAAGCGACGCTTCCGGGATTAAGGGAAAAGCAGGGTCAGCTCCAGGTC
ACGGGCGGGCGAAGGCAGGGAAGACATCCCAGGGTTATATGTGATCTAAC
TGAGAATCGCCTGGTGCCGGCAGTTACCGTATTTTAGCACCAGATTCTTT
CTAGCCTTGCGTTGTGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_j18.b1 MSMg01no164_j18.b1 CHROMAT_FILE:
MSMg01no164_j18.b1 PHD_FILE: MSMg01no164_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:31 2005
         (319 letters)



>mm_chr15_98748922_98749640
          Length = 719

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaggctagcctggtttgcatcgcaagacctgtctcaacaaaacaaaagtttcat 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaattcaagggtagcctggtttgcatcgcaagacctgtctcaacaaaacaaaagtttcat 397

                                                                       
Query: 65  gacatttttaaaaagtctcctgtttttttgtttttgttgtggtttgttttttaactattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gacatttttaaaaagtctcctgtttttttgtttttgttgtggtttgttttttaactattt 337

                                                                       
Query: 125 gttctctaataccctaggccttccacaaaaataactgtgtgaaagctgtctggagtggca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gttctctaataccctaggccttccacaaaaataactgtgtgaaagctgtctggagtggca 277

                                                                       
Query: 185 gggaaactccaataacaaataaaaaaacgcatcgggcagtggtggcacaagccactaatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gggaaactccaataacaaataaaaaaacgcatcgggcagtggtggcacaagccactaatc 217

                                                                       
Query: 245 ccagcacttgggaggcagaggcaggcggatttctgagttcgagaccagcctggtctacag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ccagcacttgggaggcagaggcaggcggatttctgagttcgagaccagcctggtctacag 157

                       
Query: 305 agtgagatccag 316
           ||||||||||||
Sbjct: 156 agtgagatccag 145


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no164_j18.g1 MSMg01no164_j18.g1 CHROMAT_FILE:
MSMg01no164_j18.g1 PHD_FILE: MSMg01no164_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:31 2005
         (505 letters)



>mm_chr15_98620890_98621794
          Length = 905

 Score =  907 bits (469), Expect = 0.0
 Identities = 496/505 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaagtttttcaaggtgggcaaggctgcaggtggggtttctcctcaggggctgacttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ctaagtttttcaaggtgggcaaggctgcaggtggggtttctcctcgggggctgacttgaa 260

                                                                       
Query: 61  gaaaggaagagctaaggtagccatgccttttctgtccactcactagactctggagctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaggaagagctaaggtagccatgccttttctgtccactcactagactctggagctcag 320

                                                                       
Query: 121 ggccaggcaaggacagggtggtacagcctgtatggttaggatgcaggccccctcccctgg 180
           ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 ggccaggcaaggatagggtggtacagcctgtatggttaggatgcaggtcccctcccctgg 380

                                                                       
Query: 181 actgaacccttatgcatcccgccaggggcatcgtgaacatagcctcctccacgaacctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgaacccttatgcatcccgccaggggcatcgtgaacatagcctcctccacgaacctgt 440

                                                                       
Query: 241 tgacggattccaagagcctgcagctggtgctcgagcccagtctgcagctgctgagccgca 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgacggattccaagagtctgcagctggtgctcgagcccagtctgcagctgctgagccgca 500

                                                                       
Query: 301 agcagcggcgactgatccgacagaacccggggatcctgcacaccccgagtggagggctcc 360
           |||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||
Sbjct: 501 agcagcggcgactgatccgacagaacccggggatcctgcacagcgtgagtggagggctcc 560

                                                                       
Query: 361 agagcgccgtgcgagagtgcaaatggcaattccgaaaccgccgctggaactgccccactg 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagcgctgtgcgagagtgcaaatggcaattccgaaaccgccgctggaactgccccactg 620

                                                                       
Query: 421 ctccggggccccacctcttcggcaagatcgtcaaccgaggtgggtgcccacgaaagcgac 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 ctccggggccccacctcttcggcaagatcgtcaaccgaggtgggtgcccaggaaagcgac 680

                                    
Query: 481 gcttccgggattaagggaaaagcag 505
           |||||||||||||||||||||||||
Sbjct: 681 gcttccgggattaagggaaaagcag 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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