BAC Information

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BAC

Clone NameMSMg01-164K05
Chromosome15 (Build37)
Map Location 69,896,974 - 69,897,264
singlet/doubletsinglet
Overlap genenone
Upstream geneKhdrbs3, LOC383050
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164K05.T7 (MSMg01no164_k05.b1)MSMg01-164K05.TJ (MSMg01no164_k05.g1)
ACCAG363052AG363053
length731772
length of high quality
(start - end)
320 (46 - 365)296 (70 - 365)
definitionCHROMAT_FILE: MSMg01no164_k05.b1 PHD_FILE: MSMg01no164_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:33 2005CHROMAT_FILE: MSMg01no164_k05.g1 PHD_FILE: MSMg01no164_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAAAATTCTTAGGCAAATGAATGGATCTGGAGGATATCATCCTT
AGTGAGGTAACCCAATCACAAATAACACACATGTTATGCAGTCACTGATA
AGTGGATATTAGCCCAGAAACTCAGAATACCCAAGATACAATTCCCAGAC
CACATGAAGCTCAAAAAGAAGGATGACCAAAGTGTAGATACTTCGGTCCT
TCTTAGAAGGGGATACAAAATACCCATGGAAAGAGTTACAGAGACAAAGT
TCGGAGCAGAGACTGAAGCAAAGGCCAGCCAGAATCTGCCCCACTTTGTG
ATCCATCCCATATTTTGTCACCCCACCCCCCCCCTATTGTGGATGCCAAC
AAGTGCTTGCTGAAATAAACCTGATATAGCTGTCTCCTGAGAGGCTCTAC
CAGTGCCTAACAAATACAGAGGTGGATGCTCTCACCAAGGAAGTCTGGAC
TGGAACTCAAGCAAGTCAGGGAGCAGGAGCTGATGCAGAAGCCATGGAGG
GATGTTCCTCACTGGCTTGCTTTCATTGGCTTGCTCAGCCTGTTCTCTTA
TAGAACCAAGACTACCAGCGCAGAGATGGTCCCACACACAAGGAGCCTTT
CCCCCTTGATCACTAATTGAGAAAATGCCTTACACTTAGATCGCATGGAG
GCATTTCCTCAACTGATGCTCGTTTCTCTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTCCTTAAATGGTATATCTACATAGTACTTG
AAAAAAAATCTCATTAAAGATGAACTGCTATTTCTATTTTGTTAAAAGAA
ATAGAAATTTCTTAGTCAGTCTCTGTCAATTTTAGTTCCTTACATCATCT
TCAGTCACTGGCATCTACCAATATCTATACATTTTGATGATTTCAGTCAT
TTGAATTTATTGAGTGTGACTTTGATACACAAAGAAACTCACTCACTAAT
ATGTAAAACTCTAAGTCTTAGAGAATTAAAGTGTACATTGAAAATCAAGT
TTTTAAGTTTATTTTCTGGCACCCCCCCAGCTAAGCAGTACAGTTCTTCA
AACAGTAAATATTTTTTCGAGACAAACAGTAAATTTTTCAGAAAGAATTT
ACATATTTCAGAAAGGATAGATAGATAGATAGATAGATAGATAGATAGAT
AGATAGATAGATAGATAGATAGTTTATAGTTATGCTTTTTCTATTTTTAT
TTTTTTGCTATTTTTATTTTCATTTATAACATTTTTTTAAAACTAATCTT
TTACTACAATTATTATTTAATTCTTCTTCCGATATTTCAGGTTTTTTCTT
TTTTATTTACTCAACTTTTTTTCCTCTTTTTTATTTTTTTATAACATAAA
TGATTATTTTCTCTTTTATTCGCCTATATCATCTCTTCTACTTTTTATAT
TTGTATTTTTATTTATTTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_k05.g1 MSMg01no164_k05.g1 CHROMAT_FILE:
MSMg01no164_k05.g1 PHD_FILE: MSMg01no164_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:33 2005
         (296 letters)



>mm_chr15_69896774_69897468
          Length = 695

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%), Gaps = 1/292 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccttaaatggtatatctacatagtacttgaaaaaaaatctcattaaagatgaactgct 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ttccttaaatggtatatctacatagtacttgaaaaaaa-tctcattaaagatgaactgct 259

                                                                       
Query: 61  atttctattttgttaaaagaaatagaaatttcttagtcagtctctgtcaattttagttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atttctattttgttaaaagaaatagaaatttcttagtcagtctctgtcaattttagttcc 319

                                                                       
Query: 121 ttacatcatcttcagtcactggcatctaccaatatctatacattttgatgatttcagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttacatcatcttcagtcactggcatctaccaatatctatacattttgatgatttcagtca 379

                                                                       
Query: 181 tttgaatttattgagtgtgactttgatacacaaagaaactcactcactaatatgtaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttgaatttattgagtgtgactttgatacacaaagaaactcactcactaatatgtaaaac 439

                                                               
Query: 241 tctaagtcttagagaattaaagtgtacattgaaaatcaagtttttaagttta 292
           |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 440 tctaagtcttagagaattaacgtgtacattgaaaatcaagtttttaagttta 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 695
Length adjustment: 9
Effective length of query: 287
Effective length of database: 686
Effective search space:   196882
Effective search space used:   196882
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)