BAC Information

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BAC

Clone NameMSMg01-164P07
Chromosome15 (Build37)
Map Location 47,436,148 - 47,565,784
singlet/doubletdoublet
Overlap geneCsmd3
Upstream geneLOC100039438, LOC665130, LOC100039485, LOC100039493
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164P07.T7 (MSMg01no164_p07.b1)MSMg01-164P07.TJ (MSMg01no164_p07.g1)
ACCAG363259AG363260
length731735
length of high quality
(start - end)
318 (51 - 368)287 (80 - 366)
definitionCHROMAT_FILE: MSMg01no164_p07.b1 PHD_FILE: MSMg01no164_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:56 2005CHROMAT_FILE: MSMg01no164_p07.g1 PHD_FILE: MSMg01no164_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,436,148 - 47,436,425)(47,565,500 - 47,565,784)
sequence
NCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTAAATCTTTAGAAAATCCCAAGTGAAATGAGTTCTTTATG
AAATAAATTCATAATGAAAACAAAAACTGGATAATGTTATTAAGTACTGA
CCTAGAAGAGTATTAGAATACAAAAGTTTACACTTTCAGAACATTTTAAG
GATTTTGTTTACTGATATTAAAGGCCATTTGGAGGTCACATAGATAGAAG
AGGAGAAGTGAATAATAGCAACAGGCATAATAAAGAAAAAGAAATGTGTT
ATACAGTGGGTATTTTAAGAAGGCAGGAGGAAACCACAGGATTGCATTCT
GGCAAAGAGGGAATGAATTTTGTCAAAACACCGACCCAATTTGGACCAAC
TTTAAGCCATCAAACACAGGACAGCCCGACAGGAAAGTTCAACAGACGTA
AAGAAACTGTTTGTGTTGACATAGAAAATATCCTTCATTGCCTCATATGG
GAAATGTGTGTGTTCCTCTGGTAAATTCAGCATATCAGGACTAAACAATA
TTTATTCCTGGTGAAGCAGCAACAAGTGCACAATCTACCTAGAAATACTT
AAATTGTCATGCTACACTGACTCCATTCAAAATTGTGAACATTAGAGATC
TTACTTATGACTTCCAAACCAAACTCGGTGAACAAAAGTAAGCGAACTCT
AAGAGAAAGCTATGATATAAGACACATTGAA
CCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGGGTTCCTGGAAACTTCA
TACTGTGCCAAGTGAGGTACAACAAAATAGCACATGTCTGTTTCTTTAAA
TAAAATCTAATAAACACAGAATCATAGCCCGGTATTTGCCTTCTCACATG
AGGGATCTTCAAGGTGACTTCTATTCTGACTACATTAATAAAAATAGTCT
TTGAAAGATCCATACAAATCTATTACAAAATACTGCCCGTGGCTGCCTAT
ATTGACAATAATGTAAATATTAAAGAAAAAAATCGAATGGCTTTATACAT
GGAAATGAGTTCAATTAATTAGTCTACTCCAACTGCACTGCAAATCCTCT
GTGCTTGTGAGCCACAGATCTGTCCATTTTCCAACAGAAAAGCAAAGAGA
AAATTGAGCCACTGACAGAAGTCTAGTACTCCAAAGCATTAATGTTAGCT
AGTTATTTAGAACATGAATTTGAATTCCTAGCAAATTAAGCCAAAGCATT
TAGTAACAGTATGTTCTAAAATGGAGACATCAACTTCCACATTATGTCCA
TCATGCACTCTGCCAGCTGCTCCATAAGGCTTCTCTCATACAAATTAGTT
CATGTAGACCAGTAATATAATAACCCAAAACAATTTTTGTTGATCCATCT
ATTATATCAACAGGGATGTTGTCTGACCTTGTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_p07.b1 MSMg01no164_p07.b1 CHROMAT_FILE:
MSMg01no164_p07.b1 PHD_FILE: MSMg01no164_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:56 2005
         (318 letters)



>mm_chr15_47435944_47436661
          Length = 718

 Score =  499 bits (258), Expect = e-146
 Identities = 273/278 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaatctttagaaaatcccaagtgaaatgagttctttatgaaataaattcataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaatctttagaaaatcccaagtgaaatgagttctttatgaaataaattcataa 264

                                                                       
Query: 65  tgaaaacaaaaactggataatgttattaagtactgacctagaagagtattagaatacaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgaaaacaaaaactggataatgttattaagtactgacctagaagagtattagaatacaaa 324

                                                                       
Query: 125 agtttacactttcagaacattttaaggattttgtttactgatattaaaggccatttggag 184
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatttacactttcagaacattttaaggattttgtttactgatattaaaggccatttggag 384

                                                                       
Query: 185 gtcacatagatagaagaggagaagtgaataatagcaacaggcataataaagaaaaagaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtcacatagatagaagaggagaagtgaataatagcaacaggcataataaagaaaaagaaa 444

                                                 
Query: 245 tgtgttatacagtgggtattttaagaaggcaggaggaa 282
           | |||||||  ||||||||||||||||||| |||||||
Sbjct: 445 tttgttatatggtgggtattttaagaaggcgggaggaa 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no164_p07.g1 MSMg01no164_p07.g1 CHROMAT_FILE:
MSMg01no164_p07.g1 PHD_FILE: MSMg01no164_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:56 2005
         (287 letters)



>mm_chr15_47565300_47565986
          Length = 687

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgggttcctggaaacttcatactgtgccaagtgaggtacaacaaaatagcacatgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 catgggttcctggaaacttcatactgtgccaagtgaggtacaacaaaatagcacatgtct 426

                                                                       
Query: 61  gtttctttaaataaaatctaataaacacagaatcatagcccggtatttgccttctcacat 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 425 gtttctttaaataaaatctaatagacacagaatcatagcccggtatttgccttctcacat 366

                                                                       
Query: 121 gagggatcttcaaggtgacttctattctgactacattaataaaaatagtctttgaaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gagggatcttcaaggtgacttctattctgactacattaataaaaatagtctttgaaagat 306

                                                                       
Query: 181 ccatacaaatctattacaaaatactgcccgtggctgcctatattgacaataatgtaaata 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 305 ccatacaaatctattacaaaatactgcccgtggctgcctatattgacagtaatgtaaata 246

                                                        
Query: 241 ttaaagaaaaaaatcgaatggctttatacatggaaatgagttcaa 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttaaagaaaaaaatcgaatggctttatacatggaaatgagttcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)