Query= MSMg01no165_b08.b1 MSMg01no165_b08.b1 CHROMAT_FILE:
MSMg01no165_b08.b1 PHD_FILE: MSMg01no165_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:07 2005
(663 letters)
>mm_chr15_6381365_6382427
Length = 1063
Score = 992 bits (513), Expect = 0.0
Identities = 564/589 (95%), Gaps = 17/589 (2%)
Strand = Plus / Minus
Query: 75 tatgaaggaaagatactagctgtttcactgtgggtacagggaaaagaacaatgccccaaa 134
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 1063 tatgaaggaaagatactagctgtttcactgtgggtacggggaaaagaacaacgccccaaa 1004
Query: 135 ggaggcctccaaaaggtaaaagcatttaaagagtctcttggtgctgtagcatccagcaga 194
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 ggaggcctccaaaaggtaaaggcatttaaagagtctcttggtgctgtagcatccagcaga 944
Query: 195 agccgggcatctactggcttctcagactcacctggatgtcagtcactcaacagtagtaac 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 agccgggcatctactggcttctcagactcacctggatgtcagtcactcaacagtagtaac 884
Query: 255 atctccttacacagtacatacatacagtagtaactatctcctgacacgtttagacagact 314
||||||||| | | ||| | ||| |||||||||||||||||||||||
Sbjct: 883 atctcctta-----t-cttac---c-------ccta-ctcctgacacgtttagacagact 841
Query: 315 tatcatggcagactcaaactgctctcctttgcagaaaaatagccaaggagagtacaaaag 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 tatcatggcagactcaaactgctctcctttgcagaaaaatagccaaggagagtacaaaag 781
Query: 375 aaacagaggaagagaaaaaagattgtgactgctgattccatagagcgtagggaaagccat 434
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 aaatagaggaagagaaaaaagattgtgactgctgattccatagagcgtagggaaagccat 721
Query: 435 gatcgccgttccaattttaccaaagagccagagagtccggcttgatccatggtgccccct 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gatcgccgttccaattttaccaaagagccagagagtccggcttgatccatggtgccccct 661
Query: 495 acctcccaagtcggattctgcctgaggttgcacaggtgccaagaagcaaacaacaaagga 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 acctcccaagtcggattctgcctgaggttgcacaggtgccaagaagcaaacaacaaagga 601
Query: 555 gattccccagcagggtggccaagactattgttagggcttctgaaaactgaactatgcagc 614
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gagtccccagcagggtggccaagactattgttagggcttctgaaaactgaactatgcagc 541
Query: 615 ctgaaaagagccagaggctgtggagaaagagtaacaggaccagccttca 663
|||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 540 ctgaaaagagccagaggctgtggagaaagagtaacagggccagccttca 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_b08.g1 MSMg01no165_b08.g1 CHROMAT_FILE:
MSMg01no165_b08.g1 PHD_FILE: MSMg01no165_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:07 2005
(563 letters)
>mm_chr15_6253307_6254269
Length = 963
Score = 1044 bits (540), Expect = 0.0
Identities = 558/564 (98%), Gaps = 2/564 (0%)
Strand = Plus / Plus
Query: 1 tttcctggcctcttagaaacgttcctttgaggcaggcctgaaaatatcaacccctccatg 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcctggcctcttagaaactttcctttgaggcaggcctgaaaatatcaacccctccatg 260
Query: 61 aaaatgagttgtttaccctcccgatcatttgttagaaagcattgaattttgctgaatcag 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 aaaatgagttgtttaccctcccgatcattcgttagaaagcattgaattttgctgaatcag 320
Query: 121 gggtaattgcttttgacaagcatacacatctaacagtaagtgataccgaaaacacttggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtaattgcttttgacaagcatacacatctaacagtaagtgataccgaaaacacttggt 380
Query: 181 gcaaggctcaaaacttggaacattctagattcttactaacgggtcatgccatttggcaca 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 gcaaggctcaaaacttggaacattctagattcttaataacgggtcatgccatttggcaca 440
Query: 241 tctttgcatgtaatcttaaacagagtcagtccaaccacgacaataatgaaaa-tgagtac 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 tctttgcatgtaatcttaaacagagtcagtccaaccacgacaataatgaaaaatgagtac 500
Query: 300 aaaagggtgaacaaaaatgagatgttatcctggtgaaacgacagacaacagggcacttca 359
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 aaaagggtgaacaaaa-tgagatgttatcctggtgaaacgacagaaaacagggcacttca 559
Query: 360 caatgggtgggtgggtgtggggctttcaaatataagaagtttaatctagtctgagtcaat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 caatgggtgggtgggtgtggggctttcaaatataagaagtttaatctagtctgagtcaat 619
Query: 420 tctacttatctagaaagaaggaaatctatacagagaaaaactaggtttaaggaagtgact 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctacttatctagaaagaaggaaatctatacagagaaaaactaggtttaaggaagtgact 679
Query: 480 actttttgagtatgtcaaaaggggaaacaaaactacttctaaaatgcggtatttatcaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 actttttgagtatgtcaaaaggggaaacaaaactacttctaaaatgcggtatttatcaaa 739
Query: 540 tgtagtttcttccttatttagagt 563
||||||||||||||||||||||||
Sbjct: 740 tgtagtttcttccttatttagagt 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
