Query= MSMg01no165_f19.b1 MSMg01no165_f19.b1 CHROMAT_FILE:
MSMg01no165_f19.b1 PHD_FILE: MSMg01no165_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:29 2005
(502 letters)
>mm_chr15_7644833_7645734
Length = 902
Score = 917 bits (474), Expect = 0.0
Identities = 492/498 (98%)
Strand = Plus / Plus
Query: 5 gaattccatttacatttccacttacaagtataagaaaaaaacataaagaataaaaactaa 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatttacatttacacttacaagtataagaaaaaaacataaagaataaaaactaa 264
Query: 65 atgctttgtggctaggagatccatgagagagaactctcttttggcacagatgggcaaggt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgctttgtggctaggagatccatgagagagaactctcttttggcacagatgggcaaggt 324
Query: 125 gagggctggcatggatctaggatctcccagaggcctgccctcttcacctgaactctgttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagggctggcatggatctaggatctcccagaggcctgccctcttcacctgaactctgttg 384
Query: 185 gaaaaaagataatatcagaggctattcactaaactagcaaaagctatgactttcagcaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaaaaagataatatcagaggctattcactaaactagcaaaagctatgactttcagcaaa 444
Query: 245 aacaactgaagatggcttcatggcagaagcagcctgagtctttaaaggacagagatccaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacaactgaagatggcttcatggcagaagcagcctgagtctttaaaggacagagatccaa 504
Query: 305 gcaagtgtgaggatcgaaaggacatggacggtactcttacccagagggcaagtcattagg 364
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 505 gcaagtgtgaggatcgaaaggacatggacggtactcttacccggagggcaagtcattagg 564
Query: 365 cgcagaggcccacccaccgatgtggtagactctcagagccttcagttcagatatccactg 424
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cgcagaggccgagtcaccgatgtggtagactctcagagccttcagttcagatatccactg 624
Query: 425 gcatcttacaattaacaatttatagggtcacattttacatgatagtgttttgggtttttt 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 625 gcatcttacaattaacaatttatagggtcacattttacatgatagtgttttggggttttt 684
Query: 485 tgtttgtttggtttgttt 502
||||||||||||||||||
Sbjct: 685 tgtttgtttggtttgttt 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_f19.g1 MSMg01no165_f19.g1 CHROMAT_FILE:
MSMg01no165_f19.g1 PHD_FILE: MSMg01no165_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:29 2005
(647 letters)
>mm_chr15_7756305_7757351
Length = 1047
Score = 866 bits (448), Expect = 0.0
Identities = 472/484 (97%), Gaps = 8/484 (1%)
Strand = Plus / Minus
Query: 168 ccttccttccttccttccttccttccttccttccttcctttctgtcttccttcttccctc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 ccttccttccttccttccttccttccttccttccttcctttctgtcttccttcttccctc 988
Query: 228 tgtctcttcctcccttccttcctttcctttttctttttatgagacactgtctctctgctg 287
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 987 cgtctcttcctcccttccttcctttcttttttctttttatgagacactgtctctctgctg 928
Query: 288 tccaggaacttactatgagaccaggctggccttgaactcacagagtgctgg----aaccc 343
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 927 tccaggaacttactatgagaccaggctggccttgaactcacagagtgttggaattaa--- 871
Query: 344 caagcatgtgccattatgcctggcgaaactgaaagcatttagctttagagttaaaatatt 403
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 -aagcatgtgccattatgcctggcgaaactgaaagcatttagctttagagttaaaatatt 812
Query: 404 ttcaacaccagtcatgtccagggttactccaggtacacaggagcagagcactttcttctg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ttcaacaccagtcatgtccagggttactccaggtacacaggagcagagcactttcttctg 752
Query: 464 aaatgaacacttcagacacaggaaagctagaagtagacatttggtgtcttgggaataagt 523
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 751 aaatgaacacttcagacacaggaaagctagaagtagacgtttggtgtcttgggaataagt 692
Query: 524 atatggcttgatgttataacttctgcaccccaagaaattgaaagggaaagacacacagct 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 atatggcttgatgttataacttctgcaccccaagaaattgaaagggaaagacacacagct 632
Query: 584 ctgaggttccatcatcttgaggacacagggtatgctggatttgaacctggccctcctcac 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ctgaggttccatcatcttgaggacacagggtatgctggatttgaacctggccctcctcac 572
Query: 644 tgtc 647
||||
Sbjct: 571 tgtc 568
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
