BAC Information

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BAC

Clone NameMSMg01-165M07
Chromosome15 (Build37)
Map Location 90,578,630 - 90,718,986
singlet/doubletdoublet
Overlap geneEG667682, Tcea1-ps1
Upstream geneLOC676575, Syt10, Alg10b, Cpne8, EG627342, LOC100042462, LOC100042471
Downstream geneSpn-ps, Kif21a, EG635871, Abcd2, LOC545126, Slc2a13, Lrrk2, Muc19, Smgc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165M07.T7 (MSMg01no165_m07.b1)MSMg01-165M07.TJ (MSMg01no165_m07.g1)
ACCAG363809AG363810
length728728
length of high quality
(start - end)		664 (65 - 728)632 (70 - 701)
definitionCHROMAT_FILE: MSMg01no165_m07.b1 PHD_FILE: MSMg01no165_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:03 2005CHROMAT_FILE: MSMg01no165_m07.g1 PHD_FILE: MSMg01no165_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,578,630 - 90,579,293)(90,718,355 - 90,718,986)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTCCTAGTTCCTAGTCAAGGAAGAAGAAAGCAAACACAAAACAATTCAAG
GAGAACCAGCCCTGCAATTGCCTCCCACATGCTAAAATTATCTATAGAGA
ATATCTTAATGTGCAGATTAATTATTGGGTCGATAACAGAACAGCAAGCT
TTGTAGATAAATAAAACTGATGTATAAATTCAACCAAACTCTATAAGTCA
GCTTAGAAAGTGTAACAGTTAAAAAAAAAATAGGGCATTTAAAGCAGCAT
TAAAACATAGAAAAGCTGTGCTGAAGCGATGGCTCAGCAGTTAAGAGCAC
TGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCATCCACATGGTG
GCTCACAACCATCTGTACTTGAGATCTGATGCCCTCTTCTGGAGTGTCTG
AAGACAGCTACAGTGTACTTACAATCAATCAATCAATAAATCTTTTAAAA
AACACAGAAAAGCTAGAACTACTATTAACTAAATCTTAAACTTCATCAAG
ACACAAAATGCAATGGAAAGTAGTTTCACACAACAAACAAAAGGAAAACC
TACTACAGCATTGGGAAGTCTGTATTCAAAGGATATTCAATCTTTCCAAA
TTTAGTTTTGGATTTAATGTCAATAATAACCAACAGACTCTTGAAGTAGG
TGGGACGATCTATTCTCTGCTCTATTTC

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAACTTGGGCTACACCCTTGGTTAAACTACT
AGGGGTAGGTCTGATTTATCTCCTTAATGTAACAGCAATGTGGCTGGTGA
AGGGTTAGTGACAGGAGTGTAGGTAACTCCAAAATTCCTACATTGAAATG
TCTCCTCTCAACATGGAAGATAGCTCCCTCATTGTCCCATAGATGAGTCC
TTCTTCTCTAATCTTTCAAGTCTAGCCCCTACCCTAGATCCAAGGCCTTT
GGGCAGTTAAGGAAGAATTGTGTAAAAATTGCTAGGAGCACCTGCATACT
CAGAAGAGGCTTTGATGACCTTCTCTTCCCCTTTGTTCTAAAAGGGAAGG
TCAATAGCCATAGGCTGGCTTTTGTTGAACTTTCACAAGTAGGCATAGGT
GATCTTATGATGGTGTTGGCAGCTTGACTGAAGCCTTACAAGGCGTGCAC
TACATGCAAACTTATTTTTAATGCAATTTTCCACTATAATAAGAAGTTTA
GATTACTGACTATAAATATGAACATAACATTCTGTATTGGCTCCACAGTT
GGAAGAATACTAAAGATAAAAATACATGAGTGTGATGCTTATTCTTCACA
CACTCGCCTTGTAAGAATTTTTAAAGACAAAGTTGCAGGTAATAATGAAA
TAGAAGGAAACAAAAATCTCTGCTCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_m07.b1 MSMg01no165_m07.b1 CHROMAT_FILE:
MSMg01no165_m07.b1 PHD_FILE: MSMg01no165_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:03 2005
         (664 letters)



>mm_chr15_90578430_90579493
          Length = 1064

 Score = 1237 bits (640), Expect = 0.0
 Identities = 658/664 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaaggaagaagaaagcaaacacaaaacaattcaaggagaaccagccctgcaattgcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaaggaagaagaaagcaaacacaaaacaattcaaggagaaccagccctgcaattgcctc 260

                                                                       
Query: 61  ccacatgctaaaattatctatagagaatatcttaatgtgcagattaattattgggtcgat 120
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 261 ccacatgctaaaattatctatagagaatatcttaatgtacagattaattattggatcgat 320

                                                                       
Query: 121 aacagaacagcaagctttgtagataaataaaactgatgtataaattcaaccaaactctat 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacagaacagcaagctttgtagataaataaaactgatgtataaattcaaccaaactctat 380

                                                                       
Query: 181 aagtcagcttagaaagtgtaacagttaaaaaaaaaatagggcatttaaagcagcattaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtcagcttagaaagtgtaacagttaaaaaaaaaatagggcatttaaagcagcattaaa 440

                                                                       
Query: 241 acatagaaaagctgtgctgaagcgatggctcagcagttaagagcactgactgctcttctg 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 acatagaaaagctgtgctgaagcgatggcttagcagttaagagcactgactgctcttctg 500

                                                                       
Query: 301 aaggtcctgagttcaaatcccagcatccacatggtggctcacaaccatctgtacttgaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggtcctgagttcaaatcccagcatccacatggtggctcacaaccatctgtacttgaga 560

                                                                       
Query: 361 tctgatgccctcttctggagtgtctgaagacagctacagtgtacttacaatcaatcaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgatgccctcttctggagtgtctgaagacagctacagtgtacttacaatcaatcaatc 620

                                                                       
Query: 421 aataaatcttttaaaaaacacagaaaagctagaactactattaactaaatcttaaacttc 480
           ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 aatcaatcttttaaaaaacacagaaaaactagaactactattaactaaatcttaaacttc 680

                                                                       
Query: 481 atcaagacacaaaatgcaatggaaagtagtttcacacaacaaacaaaaggaaaacctact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcaagacacaaaatgcaatggaaagtagtttcacacaacaaacaaaaggaaaacctact 740

                                                                       
Query: 541 acagcattgggaagtctgtattcaaaggatattcaatctttccaaatttagttttggatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acagcattgggaagtctgtattcaaaggatattcaatctttccaaatttagttttggatt 800

                                                                       
Query: 601 taatgtcaataataaccaacagactcttgaagtaggtgggacgatctattctctgctcta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taatgtcaataataaccaacagactcttgaagtaggtgggacgatctattctctgctcta 860

               
Query: 661 tttc 664
           ||||
Sbjct: 861 tttc 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no165_m07.g1 MSMg01no165_m07.g1 CHROMAT_FILE:
MSMg01no165_m07.g1 PHD_FILE: MSMg01no165_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:03 2005
         (632 letters)



>mm_chr15_90718082_90719113
          Length = 1032

 Score = 1137 bits (588), Expect = 0.0
 Identities = 621/632 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacttgggctacacccttggttaaactactaggggtaggtctgatttatctccttaatg 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 aaacttgggttacacccttggttaaactactaggggtaggtctgatttatctccttaatg 846

                                                                       
Query: 61  taacagcaatgtggctggtgaagggttagtgacaggagtgtaggtaactccaaaattcct 120
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 taacagcaatgcagctggtgaagggttagtgacaggagtgtaggtaactccaaaattcct 786

                                                                       
Query: 121 acattgaaatgtctcctctcaacatggaagatagctccctcattgtcccatagatgagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 acattgaaatgtctcctctcaacatggaagatagctccctcattgtcccatagatgagtc 726

                                                                       
Query: 181 cttcttctctaatctttcaagtctagcccctaccctagatccaaggcctttgggcagtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 cttcttctctaatctttcaagtctagcccctaccctagatccaaggcctttgggcagtta 666

                                                                       
Query: 241 aggaagaattgtgtaaaaattgctaggagcacctgcatactcagaagaggctttgatgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 665 aggaagaattgtgtaaaaattgctaggagcacctgcatactcagaagaggcttcgatgac 606

                                                                       
Query: 301 cttctcttcccctttgttctaaaagggaaggtcaatagccataggctggcttttgttgaa 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 605 cttctcttcccctttgttctaaaagggaaggttaatagccataggctggcttttgttgaa 546

                                                                       
Query: 361 ctttcacaagtaggcataggtgatcttatgatggtgttggcagcttgactgaagccttac 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 545 ctttcacaagtaggcataggtgatcttatgacggtgttggcagcttgactgaagccttac 486

                                                                       
Query: 421 aaggcgtgcactacatgcaaacttatttttaatgcaattttccactataataagaagttt 480
           ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 485 aaggcgtgcactacatgcaaacttattttcaatgcaattttccactacaataagaagttt 426

                                                                       
Query: 481 agattactgactataaatatgaacataacattctgtattggctccacagttggaagaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agattactgactataaatatgaacataacattctgtattggctccacagttggaagaata 366

                                                                       
Query: 541 ctaaagataaaaatacatgagtgtgatgcttattcttcacacactcgccttgtaagaatt 600
           |||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 365 ctaaagatgaaaatacatgagtgtgattcttattcttcacacactcgccttggaagaatt 306

                                           
Query: 601 tttaaagacaaagttgcaggtaataatgaaat 632
           ||||||||||||||||||||||||||||||||
Sbjct: 305 tttaaagacaaagttgcaggtaataatgaaat 274


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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