BAC Information

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BAC

Clone NameMSMg01-166D23
Chromosome15 (Build37)
Map Location 52,278,653 - 52,278,985
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8
Downstream geneLOC100039748, Thrap6, LOC100039745, Ext1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166D23.T7 (MSMg01no166_d23.b1)MSMg01-166D23.TJ (MSMg01no166_d23.g1)
ACCAG364132AG364133
length775754
length of high quality
(start - end)		48 (86 - 133)601 (77 - 677)
definitionCHROMAT_FILE: MSMg01no166_d23.b1 PHD_FILE: MSMg01no166_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:41 2005CHROMAT_FILE: MSMg01no166_d23.g1 PHD_FILE: MSMg01no166_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTTATACCNNCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTCAGAAGGAATNNCCGCGGNAATTCCTTCAGTTCTTCTAATA
TTTTATATGGCACATCCAACTTGATTTCACAAACGNTCTGGTCATCTGNN
TGTCACTGTGCCTCTGGTTGGTTCATGGAAAAGCAAAACTTCTTGTTGAA
AGTCAAGAATCATTCTTTTGTGGTGGGAATCCTAACCCGGAAACCCCCCA
AAAATTTATGCCCCTCTCTCCCTCCCTTTTTATGGTCTAAACACAAGAGG
GGGAAAAAAAAACCCCCCCCCCTCCCCCCCTGGGGTGTTTTTTTTCTCTA
ATTTTTTAAAAATTATTTTGTTTTTTTTTTTTTTATCACTCTCACACTCC
TTCTCCCTTTATAATATGAGCACCCCCTCCTCTCTTGAATTAAATAATAA
CTATATATCCTCCTCCTCTATAACTCTTTCTCGTTTTGTTTTTTTTTACA
ATTAATTTTATTAAATCCTTCTACTCTTTCTTCTCTTTCCTCCTTCTTTT
TTTTTCATAAACAAATCTTCAATCTCCTTTTTTCCCTTCTTTCATTTCTC
CACTCTATTTTCACCTTCCCATTCCCAAACACACCCCCACCACCCCCCAC
CCCACACACTATCTTTTTTTTTTTTTTTTTTTTTTTATATCAAAAAACAC
TAACACAAAAATTTTTTTTTTCTTTTTTCTTCTTCTTAACATAAAACAAA
CAAAATTCTTGCTACAAATGTTTTG

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAAGTGCACCAATGATGCCCTGA
TTCATACTTCTAGCTTAGGTTACTTTCAAGAACAGATTCAAATTCTGCTC
AATGCTCCATATCTCTACCATAGGAATTGTACCTTTTATATTTATCTGCT
TGAGAAGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCC
ACTTTACATCCCAATTGAGCCCTCCCCTCCCTACTCTCCTCCCAGTCCTA
TCCTTACAAATATCTTCATCATTACCTGTGAATTGCTGTCTATATGCAGG
TGAGGGCAGGCACAAGATAAGGTTAGAACCTACGATTGAGCAGTGGAAAA
AAAAGGCAGACTGAGAGTTTTACACACAGTACAGAGACACTGGAGAGGTA
GGGACACAAGGAGAAGGAAGGAAGATAGAGGAAGAGATAGACTAATCAGA
TTCATGGCGTGGTTTTAAATAGCCACAGGTAACTATGAATATCATATAAG
GGATGGATTATCACAGGACATTTTGTCCAATCTAGGTAGGCAGCTTATAC
CATTATCAATTGGCTCTGAGTTCATTGTGTGGGCGCTTTGTGGGTTGAGA
ATTTACTGACATAAGCCTGACTGATAATTTACAAGCCTCAAGAGTTTTAA
TTTTACCGAGTTATGGGGATTTGTGACACTTTTACACAGGGGGCATATGG
CTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_d23.g1 MSMg01no166_d23.g1 CHROMAT_FILE:
MSMg01no166_d23.g1 PHD_FILE: MSMg01no166_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:41 2005
         (601 letters)



>mm_chr15_52278653_52279653
          Length = 1001

 Score =  501 bits (259), Expect = e-146
 Identities = 299/333 (89%), Gaps = 32/333 (9%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataagtgcaccaatgatgccctgattcatacttctagcttaggttactttcaagaacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ataagtgcaccaatgatgccctgattcatacttctagcttaggttactttcaagaacaga 274

                                                                       
Query: 61  ttcaaattctgctcaatgctccatatctctaccataggaattgtaccttttatatttatc 120
           |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 273 ttcaaattctgctcaacgctccatatctctaccataggaattgtaccttttacatttatc 214

                                                                       
Query: 121 tgcttgagaaggttctctctctctctctctctctctctctctct---------------- 164
           ||||||||||||||||||||||||||||||||||||||||||||                
Sbjct: 213 tgcttgagaaggttctctctctctctctctctctctctctctctctctctctctctctct 154

                                                                       
Query: 165 ----------------ctctttctccactttacatcccaattgagccctcccctccctac 208
                           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 ctctctctctctctccctctttctccactttacatcccaattgagccctcccctccctac 94

                                                                       
Query: 209 tctcctcccagtcctatccttacaaatatcttcatcattacctgtgaattgctgtctata 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  tctcctcccagtcctatccttacaaatatcttcatcattacctgtgaattgctgtctata 34

                                            
Query: 269 tgcaggtgagggcaggcacaagataaggttaga 301
           |||||||||||||||||||||||||||||||||
Sbjct: 33  tgcaggtgagggcaggcacaagataaggttaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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