BAC Information

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BAC

Clone NameMSMg01-166H12
Chromosome15 (Build37)
Map Location 100,289,722 - 100,290,050
singlet/doubletsinglet
Overlap genenone
Upstream gene4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982
Downstream geneLetmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166H12.T7 (MSMg01no166_h12.b1)MSMg01-166H12.TJ (MSMg01no166_h12.g1)
ACCAG364284AG364285
length794757
length of high quality
(start - end)		327 (72 - 398)339 (76 - 414)
definitionCHROMAT_FILE: MSMg01no166_h12.b1 PHD_FILE: MSMg01no166_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:59 2005CHROMAT_FILE: MSMg01no166_h12.g1 PHD_FILE: MSMg01no166_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGGACAGCCCCGGCTACACAGAGAAACCCTGGTCTCGAAAAA
CTGAAAAAACAAACAAACAAACAAAAGCAAAGCAAAACAAAACCTCACAA
ATTCTAACCAAAAACACCAAAATTCTGGAAAAAAAATGAACCAAAGGAGA
AAGTGAAATGATTTAGGTAACACCAGTTCTGTCCCAACATGGAGTCTGCC
GCTCAGCCTTGGGTGAGACATTCAAGTGAACCCCTAGCCTTAGCTAAGAT
ACTCAAGTGAGGCACTTCTCTCTCCCGCCCCCCAGCAGCCTTGGCGACGA
TTCTGGGACTGTCTCTGACATTGACAGTGGTCCAAGCAAATTATGTGGTG
TCTGGAACATACTGCNTCCACCTCTCCAAAGAAAGTAGCTTTTACAGGTC
ACTGCAAACCCCTCACTAATATAATCCTCTCACGCACTAACGTAATTGTG
CTTTTTTCCCCCCTCCATTTTTCTCCTTACTAACCTTTACCCCATTTCCC
ACACATTTATTTTCTCCCCCTTCTTTTTTTCCCCCCTTTTCCCCCTTTCC
ATTATCACCCTTCTCCCTTTTCCTACCCCTTTTTTCCCCCTTTCCCACCA
CTACCCCCCCCTTTTTTTTCCCCCCCCCCTTCCCCCTTTCCTTTTTCTCT
CCCTTTTTATTTTTTCCCCCTTTTCCCCCCTCTTTCCCCCCTTTTCTCCC
ACCCTCCCCCTTTTTTCTCCTTCCCCCCCCTTTATATCCCTTCC

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTATATAGACCAGGCTGGCCTTGA
ACTCTGAAACCTGCCTGCCTCTGCTTCCTGAGTGCTGGGATTAAAAGCAT
GTTACCCCCCCCCAAGCCAAAAGCTCCTATTTGTTTGTTTATTTATTTAG
TTGTTTTTTGAAACAAGGTCTCACGCATGTTGTGGCTCTGGTTGTCCTGG
AACTCATTCTGTAGATAGGCTGGCCTTGAATGCAGATTTGCCTGCCTCTG
CCTCCCAAGTGCTAGCTAGCATTATAGGTGTGCATCACTACACCTAGCTC
AAGCCCCTATTTTTAACTATTGTGTTGGACAGAGAGAAAATCATAATAAT
GTTGTCATTTGGTGCCCCCCCCGCTTCCATCTCTGTTTTCGAGGATTTTC
TGCTTGTAGTTTCTGTAAACACTATTCGAAGAACTTTTTTTAATCTGTAA
TTTATGATTATGATCGTTATCCTTGTATGGATATCAGGTTTTTTGCGTTT
TTGTGTTTTCTTGACCTGTCTCCTTCCTTCTTCTGTACATTTCTGCGTTC
CCTTTCTGCGTTCCGTTTCCTTCTTGATTTGTCCTTTTCTTTCCGTTCCC
CACTGCACTTTCATCTGTTAATTTTTTTTATGTCTTTGTTCTTCTTTCTC
TATTAGTCTCCCATACCCCATATATTGCTATTATATTATTTCTCATATTT
TCTCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_h12.b1 MSMg01no166_h12.b1 CHROMAT_FILE:
MSMg01no166_h12.b1 PHD_FILE: MSMg01no166_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:59 2005
         (327 letters)



>mm_chr15_100289522_100290250
          Length = 729

 Score =  607 bits (314), Expect = e-178
 Identities = 325/330 (98%), Gaps = 4/330 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacacagagaaaccctggtctcgaaaaactgaaaaaacaaacaaacaaacaaaagcaaa 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctacacagagaaaccctg-tctcgaaaaactgaaaaaacaaacaaacaaacaaaagcaaa 259

                                                                       
Query: 61  gcaaaacaaaacctcacaaattctaaccaaaaacaccaaaattctggaaaaaaaa---tg 117
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||
Sbjct: 260 gcaaaacaaaacctcacaaattctaaccaaaaacaccaaaattctggaaaaaaaaaaatg 319

                                                                       
Query: 118 aaccaaaggagaaagtgaaatgatttaggtaacaccagttctgtcccaacatggagtctg 177
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 320 aaccaaaggagaaagtgaaatgatttaggtaacaccagttctgtcccaacgtggagtctg 379

                                                                       
Query: 178 ccgctcagccttgggtgagacattcaagtgaacccctagccttagctaagatactcaagt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccgctcagccttgggtgagacattcaagtgaacccctagccttagctaagatactcaagt 439

                                                                       
Query: 238 gaggcacttctctctcccgccccccagcagccttggcgacgattctgggactgtctctga 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaggcacttctctctcccgccccccagcagccttggcgacgattctgggactgtctctga 499

                                         
Query: 298 cattgacagtggtccaagcaaattatgtgg 327
           ||||||||||||||||||||||||||||||
Sbjct: 500 cattgacagtggtccaagcaaattatgtgg 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 729
Length adjustment: 9
Effective length of query: 318
Effective length of database: 720
Effective search space:   228960
Effective search space used:   228960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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