BAC Information

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BAC

Clone NameMSMg01-166J05
Chromosome15 (Build37)
Map Location 74,442,369 - 74,442,695
singlet/doubletsinglet
Overlap gene1700016M24Rik
Upstream geneSlc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307, LOC100040984, Bai1
Downstream geneArc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166J05.T7 (MSMg01no166_j05.b1)MSMg01-166J05.TJ (MSMg01no166_j05.g1)
ACCAG364364AG364365
length728736
length of high quality
(start - end)		330 (50 - 379)438 (80 - 517)
definitionCHROMAT_FILE: MSMg01no166_j05.b1 PHD_FILE: MSMg01no166_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:07 2005CHROMAT_FILE: MSMg01no166_j05.g1 PHD_FILE: MSMg01no166_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGGCTGAGCAAAGTCTGGAGCTCAGAGCCTAGCCCCAGAGA
CCGCAAGGGGTCCTAGTTGAGCCTCAGAGCTAGTGCAAGGATCTTTGGCG
ATTTATCCAAGGGGTCTTCATGGGAGGCCAGACGAAGGCAGCAAAGCCCA
GACTAGAGTGCCTTTGTAGCTGATGTCTCTGCTCAGGGGTCCCTCTCTGT
CACCCATCTCAGGCTCTGGGCACCATTTATGAGCTCCTCTATACCAAGGA
GTACCGGAACACAGTCTGCTGGGCCTTCTCGGGCATCCTTCTGGGCCTCC
TCACAGAGCTCTACTACCTGCTGGAGGTGGGCCTAGCGCAAGGCCTGTTT
GACTACCAGGAAGACGATCTGGCCCCTAAGCCCCTCGGGCCCTGCAGGTG
AGCCAAGACATCTGTGGCCCCTCCCTTGCACTCACTGAGCATGCTGATGC
TACGGACCCAAGAAGGGAAGGATTTTGAGTGGAGGTGGGATTGGTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTT
TTTGTGTATTATAAATAGATAATGAAAAATTTTGTGTTTGTTTTTTTGTT
ATCCGCACCCCGACGCCTCCTGCTAACTCTTTGTTTGTACCTGGCCAATC
CCACACATGATCTTCGTACTGTTTTTTA

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATAACAAGCATCAGACTA
AATACAGAATGCTTTCAAACACTTAGAAAAGGGGAATATGATAAGCCGGG
CATTGTGGTGTGAATGTGAAATGTCCCCCATTGTTCATGCTTTTAAACAC
TTTGTCTCCAGCTGGTGGCACAGCCTGGGAGGTTGTTCAACCTTTAGGGA
TTAGGATCATAGGCAGGACTTCAAGAGCATCCTCAATTACATAGCAAGCT
CAACACCAGTCAGAGCTATGTGAGACCCTGACCTCCCCCTCCTCCCCCCA
AAAATAGGCTTGACTTTAACATCCTTACCTCAATCCAAAGACACATTTTG
CTTAGTAGGTCTGGTGGTTTATCCACCCTTGTCCCAGGGAGTGGCATTAG
TAGGAGGTGTGGCCTTGTTGGAGGAAATGTTTCACTGTGGGGGTGGGCTT
TCAGACCTTCCTTTTACCTGCCTGGAAGACAAGTCTTCTCCTGTTTGCCT
TCCGAATTATATGTAGAACTCTCAGCTCCTCCAGCTCCATGCCTGCCTGT
TTGCTGCCTCTTTTTCTTCCCAGATGATTATGCATTGAACCTTCTTGTAA
CTGTATTCCCATCCCCACCTAAAAGTGGCCCTTATTATATTTTTGCCACG
CTCCTTGTTTTTTTTCTTTCCGCCCCGTTCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_j05.b1 MSMg01no166_j05.b1 CHROMAT_FILE:
MSMg01no166_j05.b1 PHD_FILE: MSMg01no166_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:07 2005
         (330 letters)



>mm_chr15_74442166_74442895
          Length = 730

 Score =  632 bits (327), Expect = 0.0
 Identities = 327/327 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaggctgagcaaagtctggagctcagagcctagccccagagaccgcaaggggtc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ggaattcaggctgagcaaagtctggagctcagagcctagccccagagaccgcaaggggtc 471

                                                                       
Query: 64  ctagttgagcctcagagctagtgcaaggatctttggcgatttatccaaggggtcttcatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ctagttgagcctcagagctagtgcaaggatctttggcgatttatccaaggggtcttcatg 411

                                                                       
Query: 124 ggaggccagacgaaggcagcaaagcccagactagagtgcctttgtagctgatgtctctgc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ggaggccagacgaaggcagcaaagcccagactagagtgcctttgtagctgatgtctctgc 351

                                                                       
Query: 184 tcaggggtccctctctgtcacccatctcaggctctgggcaccatttatgagctcctctat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tcaggggtccctctctgtcacccatctcaggctctgggcaccatttatgagctcctctat 291

                                                                       
Query: 244 accaaggagtaccggaacacagtctgctgggccttctcgggcatccttctgggcctcctc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 accaaggagtaccggaacacagtctgctgggccttctcgggcatccttctgggcctcctc 231

                                      
Query: 304 acagagctctactacctgctggaggtg 330
           |||||||||||||||||||||||||||
Sbjct: 230 acagagctctactacctgctggaggtg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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