Query= MSMg01no166_n02.b1 MSMg01no166_n02.b1 CHROMAT_FILE:
MSMg01no166_n02.b1 PHD_FILE: MSMg01no166_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:25 2005
(587 letters)
>mm_chr15_68052954_68053941
Length = 988
Score = 978 bits (506), Expect = 0.0
Identities = 551/566 (97%), Gaps = 1/566 (0%)
Strand = Plus / Minus
Query: 23 cttacccaagtgccactgaatgtgttggcatttgaagctgtcatcttttgttttcttgat 82
||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 975 cttactcaagtgccattgaatgtgttggcatttgaagttgtcatcttttgttttcttgat 916
Query: 83 gtcggctttgctgcctcacctttctcttagaggatctgttccatcctacctatcagtacc 142
|| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 915 gttggctttgctgcctcacctttctcttacaggatctgttccatcccacctatcagtacc 856
Query: 143 caggaagcatcattagtgaccaacagaatataaattaaaattatacatagttttaatttt 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 caggaagcatcattagtgaccaacagaatataaattaaaattatacatagttttaatttt 796
Query: 203 ttattatcaaattagagaaaacttttaaagatatactggtattctttgttgttataagta 262
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 795 ttattatcaaattagagaaaacttttaaagatatactggtattcttcattgttttaagta 736
Query: 263 tggaaaaatagaagcttctagatcctggtataatgttaatggccagtctatctcacagag 322
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 735 tggaaaaatagaagcttctagatcctggtataatgttaatgggcagtctatctcacagag 676
Query: 323 cattctgatagacctgttaaaattctaaatgagtacactctctctttgccagagcagagc 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cattctgatagacctgttaaaattctaaatgagtacactctctctttgccagagcagagc 616
Query: 383 ctgcacaaatacacagtatatagtgttcatggtgcattgtttaaaagttggagagaagag 442
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ctgcataaatacacaatatatagtgttcatggtgcattgtttaaaagttggagagaagag 556
Query: 443 atatgctgtcaagaaaagttaagtgaattatgtattttctatagaaaaataccacagaca 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 atatgctgtcaagaaaagttaagtgaattatgtattttctatagaaaaataccacagaca 496
Query: 503 t-aaaaaaaaaaaccagaaaaatgctacttatccattagtgcatgcctgaagcttgctaa 561
| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 495 taaaaaaaaaaaaacagaaaaatgctacttatccattagtacatgcctgaagcttgctaa 436
Query: 562 gctgagcatgtgtgaggctttctctg 587
||||||||||||||||||||||||||
Sbjct: 435 gctgagcatgtgtgaggctttctctg 410
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 988
Length adjustment: 10
Effective length of query: 577
Effective length of database: 978
Effective search space: 564306
Effective search space used: 564306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no166_n02.g1 MSMg01no166_n02.g1 CHROMAT_FILE:
MSMg01no166_n02.g1 PHD_FILE: MSMg01no166_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:26 2005
(623 letters)
>mm_chr15_67899287_67900309
Length = 1023
Score = 1122 bits (580), Expect = 0.0
Identities = 613/624 (98%), Gaps = 2/624 (0%)
Strand = Plus / Plus
Query: 1 cataaatagacatgcggctggggaagacatcatcaccagtgtcaggatagcaataggtag 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catacatagacatgcggctggggaagacatcatcaccagtgtcaggatagcaataggtag 260
Query: 61 gatacaaatgggattatcaacaaagagaatttagggcatggagaaaccccaagaaagtgc 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gatacaaatgggattatcaacaaagagaatttagggcatggggaaaccccaagaaagtgc 320
Query: 121 gatggatggagactggcaacagaatgtataattactactttaaaacccagcaaagctaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatggatggagactggcaacagaatgtataattactactttaaaacccagcaaagctaag 380
Query: 181 gaaatcttgattggtggccttgagagtcttctagcctgggaagacataaagtagaatcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 gaaatcttgattggtggccttgagagtcttctagcctgggaagacataaggtagaatcaa 440
Query: 241 ctcataccagatgagaggataccgcagaccaagaaaggtttcacccaagtccagcctaat 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcataccagatgagagggtaccgcagaccaagaaaggtttcacccaagtccagcctaat 500
Query: 301 gaaccaatgaagtttggggaggattacttatggtagcatgagttactcaaaggcagctat 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 gaaccaatgaagtttggggaggattacttatggcagcatgagttactcaaaggcagctat 560
Query: 361 atctcagagattcccttgggcaagctcatcacgtgccaccacatgcaataagtcgccatg 420
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 561 atctcagagattcccttgggcaagctcatcacgtgccaccacatgctataagccgccatg 620
Query: 421 tggcaccacaagcacagggcgctgctgtaccctgcaggaaacactcct-agggctatagg 479
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 621 tggcaccacaagcacagggcgctgctgtaccctgcaggaaacactc-tgagggctatagg 679
Query: 480 ttcctgggttcagttcaagttcttactcatttgggggaagtcaagcatcaggaacctgaa 539
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 680 ttcctgggttcagttcaagttcttactcattttggggaagtcaagcatcaggaacctgaa 739
Query: 540 gggctagaaccagtcagaactacattgtctaatatttcataatcttccagtcaattccat 599
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gggctagaaccagtcagaactgcattgtctaatatttcataatcttccagtcaattccat 799
Query: 600 cagcccaattgtatgtcacaatca 623
||||||||||||||||||||||||
Sbjct: 800 cagcccaattgtatgtcacaatca 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
