BAC Information

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BAC

Clone NameMSMg01-168L23
Chromosome15 (Build37)
Map Location 73,345,891 - 73,346,165
singlet/doubletsinglet
Overlap geneDennd3
Upstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13, LOC100041120, Chrac1, Eif2c2, Ptk2, LOC666053, LOC100040929
Downstream geneSlc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307, LOC100040984
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168L23.T7 (MSMg01no168_l23.b1)MSMg01-168L23.TJ (MSMg01no168_l23.g1)
ACCAG365831AG365832
length755727
length of high quality
(start - end)
277 (42 - 318)249 (80 - 328)
definitionCHROMAT_FILE: MSMg01no168_l23.b1 PHD_FILE: MSMg01no168_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:11 2005CHROMAT_FILE: MSMg01no168_l23.g1 PHD_FILE: MSMg01no168_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTTTTAAAGATTAATTAATTAATTAAATGTAAAATCCAGTGTTCCCCA
ACACACGAGCCATTCTTCCAGGGTTCGGTGGCCATGTTTGGCTAGTGAGT
ACAGTATTGGACGGTACTAATGGAGAACACTGTCACGGTCCAGGAAGTTT
TGTTGGTATTGTTGCCCACAGAACAGAAGGCCAGTTCACTGGTATGGTTC
CGAAGGCAGTGTGAGCACCGTCACCCACTCCTGGATGAGTTCACAGCATC
CAGCAACCAAAACAGGTATCTCTTCCTCAGCCAAGGGGAAACCAAAACTA
ACCGCACTGAATTAAGTTTCCGANTTCGANAACTCTGAAGTACCTGTCAG
GATTTCCAATAAATGACTGCACCATAAAAAAAACAAACATTCCGCGGGGG
GGGGGTTTGATATACCCCTTTTTTTTTTCTTTCTTCTTCATTCTTATTTT
ACCTCCCATTCCCTTACCCTCATCCCCGTTCCTTTCCCCCCATTTTTCTC
CCTCCTTTTCTTTCCCTTTTGCTCCCTCCTTATTTCCCACCCCACCCCCC
CCCTTTCCCGCCCATATTATTTTCCCCCCCACCCCTATTCCCATGTTATT
CAACACTCTCCCCCCCTGTATTTTTTTTTTTTTTTCCCCTTCTTCCCCTA
TTTTTCCCTCTCTATTTTCCTCATCTCTTTTATCCCACTTCCTACTCCCC
CTTAN
AGAGTGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGATGGAGTGAAATACTGA
ACCTGAAGATGAAGACAGAGATGTACTAAGGTCAGATCTACACCCTTAAC
TGTGTGCATCAGGAAAGATGAAGACAGAGATGTACTAGGGTCAGATCTAC
ACCCTTAACTGTGTGCATCAGGAAAGGCTGAAGGGGTTGGTGGATAGGTA
GTTTTCCGGAGGGAAGCCAGGAAAGGGAATAACATTTGAAATGTAAATAA
AGAAAATATCTAATAAAAAATTTCAAAATTTATTAAAAAAGGCTGAAAAC
CAGTCATCTAAGTACATGGGCTGAGCTTCCATTTACAAGACCACGTAATT
TTTTTTATAATAAAAAACAATAAAATTGCAATAATAAAAAAAAAAGACAT
TCGGGAGAGGCGGATGCTTGATAAACTAGAGACATCAAGAAAGAAGAAAA
CTAGGAAAATCATGGACTATTAGATAAGACATGCTACTGTGAATACATTC
ACAGCCTTGTTCTTGCTAATGAGATTACCAACACCTTTGTACCAAATTGA
AATTTTAGATAGAATATGCAGTTCTTTGTAAAGAAGCACTTCCGCAATAT
TCTGAAATACCCTTTCCCCCTGAAGCCAAGTTTAACAGCTACACTCCGTA
ACTCCAAAATTTGTTGTCTAACGCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_l23.b1 MSMg01no168_l23.b1 CHROMAT_FILE:
MSMg01no168_l23.b1 PHD_FILE: MSMg01no168_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:11 2005
         (277 letters)



>mm_chr15_73345526_73346202
          Length = 677

 Score =  485 bits (251), Expect = e-142
 Identities = 268/275 (97%), Gaps = 4/275 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttttaaagattaattaattaatta---aa-tgtaaaatccagtgttccccaa 60
           ||||||||||||||||||||||||||||||||   || ||||||||||| ||||||||||
Sbjct: 640 gaattcatttttaaagattaattaattaattaattaattgtaaaatccaatgttccccaa 581

                                                                       
Query: 61  cacacgagccattcttccagggttcggtggccatgtttggctagtgagtacagtattgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 cacacgagccattcttccagggttcggtggccatgtttggctagtgagtacagtattgga 521

                                                                       
Query: 121 cggtactaatggagaacactgtcacggtccaggaagttttgttggtattgttgcccacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 cggtactaatggagaacactgtcacggtccaggaagttttgttggtattgttgcccacag 461

                                                                       
Query: 181 aacagaaggccagttcactggtatggttccgaaggcagtgtgagcaccgtcacccactcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| 
Sbjct: 460 aacagaaggccagttcactggtatggttccgaaggcagtgtgagcaccgccacccactct 401

                                              
Query: 241 tggatgagttcacagcatccagcaaccaaaacagg 275
           |||||||||||||||||||||||||||||||||||
Sbjct: 400 tggatgagttcacagcatccagcaaccaaaacagg 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)