BAC Information

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BAC

Clone NameMSMg01-169B12
Chromosome15 (Build37)
Map Location 30,264,051 - 30,403,865
singlet/doubletdoublet
Overlap geneCtnnd2
Upstream geneLOC382975
Downstream gene9630009A06Rik, Dap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169B12.T7 (MSMg01no169_b12.b1)MSMg01-169B12.TJ (MSMg01no169_b12.g1)
ACCAG366072AG366073
length714712
length of high quality
(start - end)
306 (35 - 340)277 (77 - 353)
definitionCHROMAT_FILE: MSMg01no169_b12.b1 PHD_FILE: MSMg01no169_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:42 2005CHROMAT_FILE: MSMg01no169_b12.g1 PHD_FILE: MSMg01no169_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,264,051 - 30,264,352)(30,403,589 - 30,403,865)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTCTGTGT
CAGAGCACAGTGCTAAAGTGGGGCAATTAAGAACAGTTGCTGTTCTGTAT
GCATAATGAAAGGCTGAAGAGGAAGCAGATAATGTGTAATAAGAGGGGCT
GATTAGATAAACGTAGGAAGCCACCTCTGTGTCAGTCTATCAGAAAAGCT
AAAGGAGATGCCATTGACAGCAAAGATCAATGATCCTCTCAGAAATGTCC
CTCCAACCCCTGCTTCAGGAAGTTTGTGGCTAAATAGGGCTGCAGGGGAG
GGCTGATTATTTCGATCTAATAGTCTAGAGTGAGAGAGTGTTAAGTTTTT
TTTTGTCCTGNTCCATCCCTCTTCTAGTGAAAATCCTGCTCGTGAAGTTT
CTGATCTGTGTAAAGAATAGTGGAGATGGGAGCCCAGAAGGGGTTACTGC
TAGCCTTGGAACGCAAGGTACTTCCTCACTACAGTTGACCTATCCCAGTG
TCTAATTTGACCTTGAACTGGAAATCTTCCTGACTTTAGTTCAGCGATAA
AATACATAAGGAGCAGTGACAATTTAACAAGAGAAGGGTTGGACTAATGT
GTCTGATGGGTCCTGTTTTGTCACAGGATTCATTGATAATATAGCTCATA
ATGAGTGGAAAGACATGCCCAGGTCCTGCGCATATTAACTTCCGCTCATT
GCAGTACTGCTATN
ATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTTTAAATGGTGTTTTTATTA
TTGTTTCCTTGTCATTCACAATCTAAAGCCACTACCTGTTCCCAAGCTGC
CGCTCTTAACCTTTCTCTTCTACTTTTTCACTACATCATCTCCCTCTCCC
CTGTTGTCAAATATTCCTTCCTTTAAAGTCAGTTTGTTGCTCTTTTTGGG
TTTATAGTTTCTAAGAGATAAACATGTTATGAAAGTTCCCTTCCTTGTCA
TCTGGTATTTAATTTATGAAATTATTTTTACTTTCTATTATTTCAGCGGC
TTCANCCTTTCTTAAAGTGGATCTAAAACAGANACCGGTGGTTTCTTNNA
TGAAATAGNATCTTTGANNNTATTAAAGTTCAAATTAACAGAAGGTCATG
CTTGGGTACTGAGGATAGAAATGTGGACACAGCCTGAGTGGGAATCCTGG
GTTGTGTTTTGAACAGATAGTTCCTAGTGTGCATAATGAGACCATCCCAT
GAAAGAACGATATAAATAGTTAGCTGTCCTCTTCCTCAAACACTGCGCTA
TCCTCAACCATCTTTAATGCTTATTTTATTTACTTAAATTTCAAATGGTA
TCCCCCCCCTTTCCATTTCCCTCTGTAAACCACCTACCCAATCCCCCTCC
CCCTGCTACCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_b12.b1 MSMg01no169_b12.b1 CHROMAT_FILE:
MSMg01no169_b12.b1 PHD_FILE: MSMg01no169_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:42 2005
         (306 letters)



>mm_chr15_30263847_30264552
          Length = 706

 Score =  561 bits (290), Expect = e-164
 Identities = 299/302 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattctgtgtcagagcacagtgctaaagtggggcaattaagaacagttgctgttctgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctgtgtcagagcacagtgctaaagtggggcaattaagaacagttgctgttctgt 264

                                                                       
Query: 65  atgcataatgaaaggctgaagaggaagcagataatgtgtaataagaggggctgattagat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgcataatgaaaggctgaagaggaagcagataatgtgtaataagaggggctgattagat 324

                                                                       
Query: 125 aaacgtaggaagccacctctgtgtcagtctatcagaaaagctaaaggagatgccattgac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaacgtaggaagccacctctgtgtcagtctatcagaaaagctaaaggagatgccattgac 384

                                                                       
Query: 185 agcaaagatcaatgatcctctcagaaatgtccctccaacccctgcttcaggaagtttgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcaaagatcaatgatcctctcagaaatgtccctccaacccctgcttcaggaagtttgtg 444

                                                                       
Query: 245 gctaaatagggctgcaggggagggctgattatttcgatctaatagtctagagtgagagag 304
           |||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||
Sbjct: 445 gctaaatagggctgcaggggagggctgagtaaatcgatctaatagtctagagtgagagag 504

             
Query: 305 tg 306
           ||
Sbjct: 505 tg 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no169_b12.g1 MSMg01no169_b12.g1 CHROMAT_FILE:
MSMg01no169_b12.g1 PHD_FILE: MSMg01no169_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:42 2005
         (277 letters)



>mm_chr15_30403389_30404065
          Length = 677

 Score =  458 bits (237), Expect = e-133
 Identities = 267/277 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttttaaatggtgtttttattattgtttccttgtcattcacaatctaaagccactacc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 477 ttcttttaaatggtgtttttattattgtttccttgtcattcacaatctaaagtcactacc 418

                                                                       
Query: 61  tgttcccaagctgccgctcttaacctttctcttctactttttcactacatcatctccctc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 417 tgttcccaagctgccgctcttaacctttctcttctactttttcactacattatctcactc 358

                                                                       
Query: 121 tcccctgttgtcaaatattccttcctttaaagtcagtttgttgctctttttgggtttata 180
           | ||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 357 ttccctgttttcaaatattccttcctttaaactcagtttgttgctcttcttgggtttata 298

                                                                       
Query: 181 gtttctaagagataaacatgttatgaaagttcccttccttgtcatctggtatttaattta 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 297 gtttctaagagataaacatgttatgaaagttcccttccttgtcatttggtatttaattta 238

                                                
Query: 241 tgaaattatttttactttctattatttcagcggcttc 277
           ||||||||||| |||||||||||||||||| ||||||
Sbjct: 237 tgaaattatttctactttctattatttcagtggcttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)