BAC Information

Click to search

BAC

Clone NameMSMg01-169B22
Chromosome15 (Build37)
Map Location 5,250,204 - 5,250,512
singlet/doubletsinglet
Overlap genenone
Upstream genePlcxd3, C6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4
Downstream geneLOC100039322, LOC100039308, LOC666291, LOC666319, LOC100039358, LOC666323, Dab2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169B22.T7 (MSMg01no169_b22.b1)MSMg01-169B22.TJ (MSMg01no169_b22.g1)
ACCAG366087AG366088
length733735
length of high quality
(start - end)
313 (45 - 357)32 (318 - 349)
definitionCHROMAT_FILE: MSMg01no169_b22.b1 PHD_FILE: MSMg01no169_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:44 2005CHROMAT_FILE: MSMg01no169_b22.g1 PHD_FILE: MSMg01no169_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCTGGCGAACAGAGCGCCAGGCCTGTGATACAGTATGAAATCTTC
TCCCTTCTGAGGGAAGTTCCTCATAGCTGTGTGTTTCCATTCTCATGCTG
TTGTCTAGCCAGTCCATCCTTGTTCATGTCTTTTCTTAAGCCCTATCCCT
GAGCTCCAGCGTGGTTCCTTCCCATCGCTTCTGATTACTCTAATCTAATT
ATAGCTCTCAGAAGCCTCTCTAACTTACAAGATAATAACAGCATCCTGTA
GAGTTCAAACAAAATATATTATTAAAAACAAAGTTAATTGCACCTCAAGG
TGTTTATTTTTTTTTTAACCCCCCCCCCGCCCTTGAATCATATAGAGTGG
ATATACTTCTTTCTCAAAGAGCTTCACAACCACTAACTGTCTCAAAGTAA
TAGTAAATACCTTCTAACCTGTGAAAACAAGAGTAGCTTAAAGTGAAGCA
AGCCTGTCCCTCTCATGACAGCATGGGAGTCCCAGCTCTCATTCCCTGGG
GAGCAGTTTCCTGAACACGGGGTAATGTGAGAACAAAGGCTGGAAGTCTT
CCCATCTCCTTGCCCTGTCACTCACATTTACTTATAATCCCTTGGCCATG
TACCTTGTTATTTTAGAATGTGGCCTTCATCAATTATTATGTAAGGAATA
AACAAAGTCCTAATGAATTATTAGACAAGAATT
TCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGCCCGACATCGGAGAAGTC
ATGCGTTTGCGAAGTCGGAGAATTAACTTGTCAAAATTACTTGCGTTTCT
CATGTTTGCGTGGTTTGCTTTGAAACCTTTCTACAAGTCAAAGAGATTTA
CGGTATTTCCTTTATTATTTTTGGAAGAGAAAGCGGTGGAAAGAAAGTGA
AAACATTAAACATTATGAAGCTCTAGTTAAGTTGTTATTTAGAAACAAAG
GACATAGTTACCTAGCACCCAATTCATAATCTTTTGAAATATAATAAAAA
ATATTTAATTAAGATAAGTTGCGATTTATTCTCGCCCCCCCCATTTTATT
AAGTTCTGAAAGGNAATATTGGNACNATTATAATAAAAACTACCAAAACT
ATTGAGGCCTTTTTAACCTTTCATCATTTTCAAATTAAACTTAAAATCCT
TAATACTTACAATGCTGAAGGCTCAAATGTTTCTAGAACAAGTACGACAT
GTACGTATTGCCAGCTTGCCTATTCGACGTATAGCATGCCTTGTCTGTGT
TGTTACTTGCCCCTCCTCCCACCATACTTACCTCCTTTCCTCCACCCCCT
CCTCGACTCTTTTTTCATCTCCTCTTTTCTTCTCCTTCCCTCTGCTCCCT
CCCCTTAGGCCTCAGCTCTCCCAACGCCACTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_b22.b1 MSMg01no169_b22.b1 CHROMAT_FILE:
MSMg01no169_b22.b1 PHD_FILE: MSMg01no169_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:44 2005
         (313 letters)



>mm_chr15_5250000_5250712
          Length = 713

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttctggcgaacagagcgccaggcctgtgatacagtatgaaatcttctcccttct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattcttctggcgaacagagcgccaggcctgtgatacagtatgaaatcttctcccttct 454

                                                                       
Query: 65  gagggaagttcctcatagctgtgtgtttccattctcatgctgttgtctagccagtccatc 124
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 453 gagggaagttcctcatagctgtctgtttccattctcatgctgttgtctagccagtccatc 394

                                                                       
Query: 125 cttgttcatgtcttttcttaagccctatccctgagctccagcgtggttccttcccatcgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cttgttcatgtcttttcttaagccctatccctgagctccagcgtggttccttcccatcgc 334

                                                                       
Query: 185 ttctgattactctaatctaattatagctctcagaagcctctctaacttacaagataataa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttctgattactctaatctaattatagctctcagaagcctctctaacttacaagataataa 274

                                                                       
Query: 245 cagcatcctgtagagttcaaacaaaatatattattaaaaacaaagttaattgcacctcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cagcatcctgtagagttcaaacaaaatatattattaaaaacaaagttaattgcacctcaa 214

                    
Query: 305 ggtgtttat 313
           |||||||||
Sbjct: 213 ggtgtttat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)