BAC Information

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BAC

Clone NameMSMg01-169J17
Chromosome15 (Build37)
Map Location 11,834,646 - 11,998,149
singlet/doubletdoublet
Overlap geneNpr3, LOC381002, Sub1, LOC100040027
Upstream geneC1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars, LOC100039772
Downstream geneZfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169J17.T7 (MSMg01no169_j17.b1)MSMg01-169J17.TJ (MSMg01no169_j17.g1)
ACCAG366429AG366430
length737722
length of high quality
(start - end)		316 (46 - 361)258 (430 - 687)
definitionCHROMAT_FILE: MSMg01no169_j17.b1 PHD_FILE: MSMg01no169_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:20 2005CHROMAT_FILE: MSMg01no169_j17.g1 PHD_FILE: MSMg01no169_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,997,840 - 11,998,149)(11,834,646 - 11,834,903)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTGAAGATGGCGGAAGGAACTCCCTAAAGACAACAGGGGAAGC
CACTCTCCATGTTCTGCCCTCCTTGCATTTATCCCTCAGCCTTGCTGTAG
CAGGTTTTATTTTATTTTATTTTTTCCAGAACACTTGACCCCTCCCTCAG
CCTGAACTTGCAGCTTCATCCCCGATTTTCCTGGATGGACCCAGGGCTTT
GAGCCAGGAAAGTGCTGGAAAGAACAGGATTGCCCTGGGGGAGTGGCAGA
GGTAGGGATCCAAATCCCTGACTTATCCCAGCTTAAAAAGTCATCAGTAT
ACTTTATTATTTTTTTTGTCCGCCTCCCCGCGTTATTTGGATCCATTTCG
ACTCTAACCCTGGGAGGAACAAGGGAGAGAGGGAGGGGGAGAAAGGGAGA
GAGATANACACCTACCCATAAACTCTTATTCCCACCACGTACCCAGCCCC
GTTCATATAAGTCTCTTCACCCCTTCACCATTTCGACTTTTCTTCCTTCA
TCAACCATTATACTTTTTATTCCTTCCCCCCCCTTTTTTTTCCCCTTCCC
CTTACTTAGCGATCCTTATTATTTTATTTATTTTTCTACCCCCCACCATT
ATCCCCCCCACTATATATTTATTTTCATTCCACTCTTGTCTCCATACATA
TATTTTTCCCCCTCCCCGCCCTATTTATTCTCTCCCG

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCGCAGAAATCCTGGAACTCACGGGACTCCGGAGCTGTCG
AAGAGGGGGAATTTCCTCGGTGTTTAGCCACACCTGTCATACCTGGGATG
GCGCTAGCAAGCGGCTCAGACGTTCCCTCGACTGGCCAGATCCACCTCCC
CGAGACTGTGTAGGCACACCCCTTCCACCGCGATGGGCTATCCTCCACCC
GTCCCTGGATCAGGCAGCTCACACTTGGACAAGCCCCCGCGCGACCTCCA
CGGGTCCTTGGGTTACTTTGAAGGGTGGGGTCTGCAGAAGATTGACTTGG
TGTTTTTTTTTGCACCCCCACCGCACAACCGCTGAGTCAGAGCCAAGGAC
CCCCCTGGTCCCGCTCCCGATAAAATCGCTCGCTGCCTTGGATGTAGCGC
ACTATGTCGTCCAGGTCCAAGTCTTTGGTCTCGTCGAAATTGTAGGCAGA
CGTGTGCAACCCCTCCTCCTGAAAAACCTCGTGGACCCCCTCGAGGGTGA
AATAACAGTTCCTCTCGAGTTTGTCGTCGCTGTAGACCAGGGCTGCACGG
CTCCAGTGGTGGTGGCGAAACAGAGCGAGCATCATCTCTCCCATCTTGGC
GTAGGCAGGCGCCACGCGCGTGAGGTGCGAGTATTCCGTGTCCTTGTGCT
GGATACCGGGGGCCAGCGCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_j17.b1 MSMg01no169_j17.b1 CHROMAT_FILE:
MSMg01no169_j17.b1 PHD_FILE: MSMg01no169_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:20 2005
         (316 letters)



>mm_chr15_11997510_11998225
          Length = 716

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttgaagatggcggaaggaactccctaaagacaacaggggaagccactctcca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gaattcacttgaagatggcggaaggaactccctaaagacaacaggggaagccactctcca 581

                                                                       
Query: 65  tgttctgccctccttgcatttatccctcagccttgctgtagcaggttttattttatttta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tgttctgccctccttgcatttatccctcagccttgctgtagcaggttttattttatttta 521

                                                                       
Query: 125 ttttttccagaacacttgacccctccctcagcctgaacttgcagcttcatccccgatttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ttttttccagaacacttgacccctccctcagcctgaacttgcagcttcatccccgatttt 461

                                                                       
Query: 185 cctggatggacccagggctttgagccaggaaagtgctggaaagaacaggattgccctggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 cctggatggacccagggctttgagccaggaaagtgctggaaagaacaggattgccctggg 401

                                                                       
Query: 245 ggagtggcagaggtagggatccaaatccctgacttatcccagcttaaaaagtcatcagta 304
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 400 ggagtggcagaggtagggatccaaatccctgacatatcccagcttaaaaagtcatcagga 341

                     
Query: 305 tactttatta 314
           ||||||||||
Sbjct: 340 tactttatta 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no169_j17.g1 MSMg01no169_j17.g1 CHROMAT_FILE:
MSMg01no169_j17.g1 PHD_FILE: MSMg01no169_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:20 2005
         (258 letters)



>mm_chr15_11834446_11835103
          Length = 658

 Score =  499 bits (258), Expect = e-146
 Identities = 258/258 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgctgccttggatgtagcgcactatgtcgtccaggtccaagtctttggtctcgtcgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgctgccttggatgtagcgcactatgtcgtccaggtccaagtctttggtctcgtcgaaa 260

                                                                       
Query: 61  ttgtaggcagacgtgtgcaacccctcctcctgaaaaacctcgtggaccccctcgagggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtaggcagacgtgtgcaacccctcctcctgaaaaacctcgtggaccccctcgagggtg 320

                                                                       
Query: 121 aaataacagttcctctcgagtttgtcgtcgctgtagaccagggctgcacggctccagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaataacagttcctctcgagtttgtcgtcgctgtagaccagggctgcacggctccagtgg 380

                                                                       
Query: 181 tggtggcgaaacagagcgagcatcatctctcccatcttggcgtaggcaggcgccacgcgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtggcgaaacagagcgagcatcatctctcccatcttggcgtaggcaggcgccacgcgc 440

                             
Query: 241 gtgaggtgcgagtattcc 258
           ||||||||||||||||||
Sbjct: 441 gtgaggtgcgagtattcc 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space:   161601
Effective search space used:   161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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