BAC Information

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BAC

Clone NameMSMg01-169N13
Chromosome15 (Build37)
Map Location 20,800,663 - 20,801,002
singlet/doubletsinglet
Overlap genenone
Upstream geneAcot10, LOC100040302
Downstream geneCdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169N13.T7 (MSMg01no169_n13.b1)MSMg01-169N13.TJ (MSMg01no169_n13.g1)
ACCAG366594AG366595
length693731
length of high quality
(start - end)
318 (376 - 693)340 (385 - 724)
definitionCHROMAT_FILE: MSMg01no169_n13.b1 PHD_FILE: MSMg01no169_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:39 2005CHROMAT_FILE: MSMg01no169_n13.g1 PHD_FILE: MSMg01no169_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGCT
CAACATCCTTAATCATCAGCCAAATGCAAATCAAACTAAAATTTCTTATG
TAATTGTTCACATATTTTATTTTACTTTTTATTAGATATTTTCCTTATAC
ACATTTCAAGTGTTATCCCCTTTCCTAGTATTCCCTCTAAACCCCCCTCT
CTCCTCCCCCCTCTCCCTGTTCCCCAATCCACCAACTCCTGCTTCCTGAC
CCTGGCATTCCCCTATACTGGAGCATAGAACCTTCACAGGACCAAGGGCC
TCTCCTCCTATTGATGACTCCCCACCCCATCCTCTGCTACCATATGCAGC
TAGAGCCATGAGTCCCACCATGAAGACACACACCTTTAATCCCAGCACCC
GGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACA
AAGTGAGTTCCAGGACAGCCAGGGTTATACAGAGAAACCCTGTCTCGAAA
AACCACCATGTGTTTTCTTCGGTTGGCAGTTTAGTCTCAGAAAGCTCTGG
GAGTTGTTCCTCATATGAGGCTGCAAACCCCTTCAGCTCTTTGGGTAATT
TCTCTAACTCCTTCACTGGGGACCCTGTGTTCTGTCCAGTGGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATCAGCATGGCAGCTTATACAG
GTCCTGAGCCAGAGAAATTCAGCCAAACATGCTAACATGAAAGAACGAAA
GCTCACGGAGACCCAATCCTAGACAGTGAGACACTTAATAAAAAACAGTG
GTTGAAATATTCTTCCCCAAGGAAGAGACTGCAAATTAATTAACTAATAC
CAAATCATCAGCCTGAAATCATATATTTAACATTATATATTATACATGTT
GAGCAAGTGTACTTATAATCTTGGAAATATATCATTTCAAATAATATATA
TACTACTAATTTTTGTTTTTACCCACCCCACACCATATGTATATAAGCAA
AGTAATAGAGAATAATTTGATATATAGAAATTATAGTGAATATAGCAATT
GAGAAATATTCATTTGAAAGACTGCAAAATGGATACAGGGGAAAAGCTGG
AGGGAGAAAAAGCAAGAGGAAATGACAAAACTATATTTTAATAGCATACA
TTTAAGAAATTAAATATCAGCCTTGCCACCTCAGTCTCTGTGAATTTAAT
TGATTCAGGGCTGATGGAGGCTCACAGACATGGTCCTCTCTGCATGTGTA
TGGCTGGTAGTTTGGTGTTTTGGGTGAATCATAACAATGGAAATGGGGTG
TGTTTCTGATTATTTGCCTGTGCCTGGGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_n13.g1 MSMg01no169_n13.g1 CHROMAT_FILE:
MSMg01no169_n13.g1 PHD_FILE: MSMg01no169_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:39 2005
         (340 letters)



>mm_chr15_20800305_20801044
          Length = 740

 Score =  658 bits (340), Expect = 0.0
 Identities = 340/340 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatgtatataagcaaagtaatagagaataatttgatatatagaaattatagtgaatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 atatgtatataagcaaagtaatagagaataatttgatatatagaaattatagtgaatata 639

                                                                       
Query: 61  gcaattgagaaatattcatttgaaagactgcaaaatggatacaggggaaaagctggaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gcaattgagaaatattcatttgaaagactgcaaaatggatacaggggaaaagctggaggg 579

                                                                       
Query: 121 agaaaaagcaagaggaaatgacaaaactatattttaatagcatacatttaagaaattaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 agaaaaagcaagaggaaatgacaaaactatattttaatagcatacatttaagaaattaaa 519

                                                                       
Query: 181 tatcagccttgccacctcagtctctgtgaatttaattgattcagggctgatggaggctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tatcagccttgccacctcagtctctgtgaatttaattgattcagggctgatggaggctca 459

                                                                       
Query: 241 cagacatggtcctctctgcatgtgtatggctggtagtttggtgttttgggtgaatcataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cagacatggtcctctctgcatgtgtatggctggtagtttggtgttttgggtgaatcataa 399

                                                   
Query: 301 caatggaaatggggtgtgtttctgattatttgcctgtgcc 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 caatggaaatggggtgtgtttctgattatttgcctgtgcc 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)