BAC Information

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BAC

Clone NameMSMg01-169P17
Chromosome15 (Build37)
Map Location 10,088,585 - 10,088,891
singlet/doubletsinglet
Overlap genenone
Upstream geneLmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r, C230086A09Rik
Downstream genePrlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14, C1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169P17.T7 (MSMg01no169_p17.b1)MSMg01-169P17.TJ (MSMg01no169_p17.g1)
ACCAG366691AG366692
length712722
length of high quality
(start - end)
315 (45 - 359)281 (78 - 358)
definitionCHROMAT_FILE: MSMg01no169_p17.b1 PHD_FILE: MSMg01no169_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:49 2005CHROMAT_FILE: MSMg01no169_p17.g1 PHD_FILE: MSMg01no169_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGTTTTCCTTTCCCTTTATTTTTATAGCCTGACTAGCCTGATGC
TGTGTGCATACTCACTGGCCCGAGGCCCTTAGAGCATGGCTGACTTACAG
GAAATACCCTTAAGAATGCTTGAGAGATGGCTCAGTGCTTAAGAGCCCTC
GTTGCCCTCCCACAGGACTAGAGTTTGAATCCCAGAACCTATGTTAGGCA
GTTCATACCTGTCTGGAACTCTAGCTCCAGGAGATCTGTACTCTTCTAGC
CTCTGTGGGCATCTGTATTAACAGACATTCACACAAACAAACAAACAAAA
AATTATTTTCTTACTACCCACCGACCGCTGATCCTTCCCCATCCCTAGCA
GCTGTCTGCGATCACATCCTCTCAGCTCAGGCTGGGGGCTCAATCCATGT
GACTTGTTGACTAGTGTGCAGCAGCCACAGCCATTGCACGTTTATGAATT
CCCTGGTTCTTCTGTGTCCAGAAGACACTATTTCACTGTGGTCTTCCACC
TTTGGCTTTTACAATCTTCTCATCCCCTCTTCTGTGACAATTCCTGAACT
GTGGGAGATGGGGCAGGTGGTAACATACAGAAGTTTATGGTGGAGCACAG
CAGGTATGCTTATACTCTGAACTTTGTCACTAACAAATAACATTACGATT
TTTATTTTTTTT
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCTTATTCCAGTCAAGATGGGC
AAGATAAATAAAACAAACGGCAGCAGATGCTGGCAAGGATGTGGAGAAAG
AAGAACACTTATTCATTGTGGAAGGAGTGCAAATTTATATAGCCACCATG
GAAGTCAGTACGGAAGTTCCTTCAAAAGCCAAAAATTGATCTATCTCAAG
ATCCATCTATAAAACTCTTGTTCATATACAAAAGGGCCCCCTGCTCATAG
CTGTTCTATTCATAATGTCCATAAATTGGAAAAGGCCTTGAAGTCTACCG
TCTGGTTTANTTGANTTCTCTAAATCAGGNACCTTTATACAATAAAATTT
TATCTGGCTTTCNNGAACAACGAAAATATAAAATCTGCAGGCGAATGGAT
GGCCCTAGAAACAATCACCCAGAGTGATGGAACTGAGACTCAGAAAGACA
AATATTGAATGTTTTCCCTCATATGCCAGTGTTAGCTTTTAGATATATGC
GTTTCAATATAAGAATAACCAAGGTTAAACAGAAAGTAGAGAGCTAGGAT
GAAGGAGGAGGTGATCTTCTAGGTACCATGAATGGGAAATAACTATATTG
TTACCATCCCATAAAAGGGAAATTACAATAGCAGGATTATTTGGCGTGCA
GTATGTCTTTTTATTCTTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_p17.b1 MSMg01no169_p17.b1 CHROMAT_FILE:
MSMg01no169_p17.b1 PHD_FILE: MSMg01no169_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:49 2005
         (315 letters)



>mm_chr15_10088381_10089095
          Length = 715

 Score =  540 bits (279), Expect = e-158
 Identities = 300/307 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgttttcctttccctttatttttatagcctgactagcctgatgctgtgtgca 64
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgtcttcttttccctttatttttatagcctgactagcctgatgctgtgtgca 264

                                                                       
Query: 65  tactcactggcccgaggcccttagagcatggctgacttacaggaaatacccttaagaatg 124
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tactcactggtgtgaggcccttagagcatggctgacttacaggaaatacccttaagaatg 324

                                                                       
Query: 125 cttgagagatggctcagtgcttaagagccctcgttgccctcccacaggactagagtttga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttgagagatggctcagtgcttaagagccctcgttgccctcccacaggactagagtttga 384

                                                                       
Query: 185 atcccagaacctatgttaggcagttcatacctgtctggaactctagctccaggagatctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcccagaacctatgttaggcagttcatacctgtctggaactctagctccaggagatctg 444

                                                                       
Query: 245 tactcttctagcctctgtgggcatctgtattaacagacattcacacaaacaaacaaacaa 304
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 445 tactcttctagcctctgtgggcatctgtaaaaacagacattcacacaaacaaacaaacaa 504

                  
Query: 305 aaaatta 311
           |||||||
Sbjct: 505 aaaatta 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)