ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATTGATAAGTCTTCTGACTAGGCACGAGAGTCTTTACCTGCTA
AGCTATCTTGTTTTATATATGTGTATTTTTCTCTCTGTTCCTGTATTCAT
ATAAGTGGTGTCATATATAAACACTACTATGTATGTTTATGTGTGTGCTT
GTGTATATGCATATGTGTATGTGTGGTTTTTGTTTGCTTGCTTGTTTGTT
TTCTGTTGTGCTATGCTGAAGTCTGTTAATGTTGGCGAAGGCATTCAGGG
TTGTCAGTCAGTTATTTTTTGTACCACTGTAGTTTGTGACTTGAACCACA
AATAAGGTAAAGTCCCAGNACGGAACCCCTTATATATATTATTTGTTTTT
TGGANAGGGTATGAAAAAAAAAAAAAAAAAATTTGGGGGGGCGTGCCTTC
TGTCCCAATATTGTATACCCCTTTTTTTCCACCTATATTCCCATTGTTAC
TATCTTATAGACGTTCTCATTTTTTTGCGCCTTATCTCTTTTCCTCCCGC
CTCCTTTCTCCCATACCTTTTTTATCTTATCTTTCTTTTCCCCTCTTCTC
CCTCCCCCCTTTCTAGTATCCCACCCTTTTTTTCATTTACTCCCCCTTCC
TTTCTTGTTCCCCCCCTTATTTTTTCCCCCAATTTTCCACCAACCCCTAC
CTTTTCTTTCTACTTTTTCCCCTTTTTTATCTTCCTTTTTCTCTTTTATT
CCCTCCTTTTCCC

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCTGTAAGCTGCTCAGGTCATTG
GCAGGCACACCTGCCTTCTTCCCTTCCAGTATGCCCTATATCAGCCTCCT
TGCTAGGAACATTGGCAAGGGATGAGAAAAGCCTGACACAGTTGCATTTA
AATTAAACTTAACTCTTTATCTGACTTGTGACTTTAGGTCTCAAGATGCC
ACAATCCACAATCGCTTCCCCCAGCTCTTATCTGCCACCATTGTCTAGTG
GTACCAGCTTTCTGGCATATTACCCTGTCTATCATTAGCAGTCTGGGTCC
AATGTTGAGTTANGGTCTAATTCGNNATCCGTCCAATGTTGCTTTGCCTT
AATTGTTGTTGAAAAGGTACAAAAATTAAAAAACTTCCTCCACCATGGCA
AGCTATGTACTTAGAGCTATCCTTGAGCTACAAATTCTGGAATCCCTTAA
GCACTCTACAGAACACCAAATGATGAAGCCACTGGGATTTATTTTATTTT
ATTTTATTTCATTTTATTTTATTTTTGTGAGCAGTAATACTAAATAGAAG
GAATATATTTAAAAATGATCTAGGAGATTTTTTCCATCCTGGAATGTGGG
AAACTCCTTTTTCTCAGTCATTTTGATGGATAAGATCACACCTGCCTCAT
TTTCTA

Query= MSMg01no170_j11.b1 MSMg01no170_j11.b1 CHROMAT_FILE:
MSMg01no170_j11.b1 PHD_FILE: MSMg01no170_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:35 2005
         (239 letters)



>mm_chr15_47752386_47753024
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 234/235 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaattgataagtcttctgactaggcacgagagtctttacctgctaagctatcttg 64
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 205 gaattcaattgataagtcttctgactaggcacaagagtctttacctgctaagctatcttg 264

                                                                       
Query: 65  ttttatatatgtgtatttttctctctgttcctgtattcatataagtggtgtcatatataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttatatatgtgtatttttctctctgttcctgtattcatataagtggtgtcatatataa 324

                                                                       
Query: 125 acactactatgtatgtttatgtgtgtgcttgtgtatatgcatatgtgtatgtgtggtttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acactactatgtatgtttatgtgtgtgcttgtgtatatgcatatgtgtatgtgtggtttt 384

                                                                  
Query: 185 tgtttgcttgcttgtttgttttctgttgtgctatgctgaagtctgttaatgttgg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtttgcttgcttgtttgttttctgttgtgctatgctgaagtctgttaatgttgg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no170_j11.g1 MSMg01no170_j11.g1 CHROMAT_FILE:
MSMg01no170_j11.g1 PHD_FILE: MSMg01no170_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:35 2005
         (247 letters)



>mm_chr15_47827758_47828404
          Length = 647

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttcctccaccatggcaagctatgtacttagagctatccttgagctacaaattctggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 acttcctccaccatggcaagctatgtacttagagctatccttgagctacaaattctggaa 531

                                                                       
Query: 61  tcccttaagcactctacagaacaccaaatgatgaagccactgggatttattttattttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 530 tcccttaagcactctacagaacaccaaatgatgaagccactgggatttattatattttat 471

                                                                       
Query: 121 tttatttcattttattttatttttgtgagcagtaatactaaatagaaggaatatatttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tttatttcattttattttatttttgtgagcagtaatactaaatagaaggaatatatttaa 411

                                                                       
Query: 181 aaatgatctaggagattttttccatcctggaatgtgggaaactcctttttctcagtcatt 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 410 aaatgatctaggagattttttctatcctggaatgtgggaaactcctttttctcagtcatt 351

                  
Query: 241 ttgatgg 247
           |||||||
Sbjct: 350 ttgatgg 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)