BAC Information

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BAC

Clone NameMSMg01-170M14
Chromosome15 (Build37)
Map Location 39,327,308 - 39,488,388
singlet/doubletdoublet
Overlap geneRims2
Upstream geneAzin1, Siah1-ps2, Atp6v1c1, Baalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215
Downstream geneTm7sf4, Dpys, Lrp12, LOC100039130, LOC670013, LOC664872, Zfpm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170M14.T7 (MSMg01no170_m14.b1)MSMg01-170M14.TJ (MSMg01no170_m14.g1)
ACCAG367241AG367242
length728738
length of high quality
(start - end)
148 (184 - 331)282 (78 - 359)
definitionCHROMAT_FILE: MSMg01no170_m14.b1 PHD_FILE: MSMg01no170_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:50 2005CHROMAT_FILE: MSMg01no170_m14.g1 PHD_FILE: MSMg01no170_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,327,308 - 39,327,442)(39,488,107 - 39,488,388)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCANGAAACCGCGG
AANNCNCACNAATTACCCCGAAAAAGCAGAAAANNANCATGGANNCATTN
AGAANAAGNNAGAAAGGGATTAGCCCCAANAAANTCANAACTGAGAAAGG
NNGAAATNGAAAAANANAGAAANAANAAGGGNNACTGAGCTTATCATTCA
TCATTTTGAAATTATCAAAATAAACCTTTATTACTTTATTTCTGGAATAA
AATTAGATAGGATGCAAACTGGCAGGTTCTTAGGTACATATATATAAGAT
AAAAAGATTCATAGAGGCTTTTTTTTGTATACAGGCAACGCACATAAATC
ACAGACTGATTGTTTTTTTTTCCCGAAACCGNGCCCGNAAANATTACAGA
AAAANNNNGAAAAANNNNCNNNAAGAACAAAAAAACNACNAGGGGGGGGA
GGAAACCCNGAACCAGCCCTCTTCTACCTCTACGGCAAGGTAGAATTAGT
AATTTCAACTACTCCCACAAATGATGTAGTACATTTTGACCGTGCTCACC
GAACAGACTTTTATAGCCCTGAACAAATTGTCTCAGAATATAACAAACAA
TAAATATTTCTATTTTTTAAGCAATATGTATGCCCTTGATCTTATTTCTG
ATTTTTCTAACAATAATCCAGAATCCCCTGCCTAGTAAAAATGCAAGCAG
GCTCGATGACACATCATGTTATTTCCCA
CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGGCAGAGAGGAGCACAGAAGAC
TCAGGAAGGTACTTTACGTGGTGGGAGACTAATTTAAGGCAAAGAGAATT
GACACATACAGAGATGGACCACAATGATGACCAAATGATTCTACTTTCAC
CTGGTAATGCAGAGAATAATCTGTGATTATTGAGGAAGCTTCAGTTCCAT
TTTATTAGTCCTATGTTCAATTGTTTTCAAAATATTTCTAGTTTCACATA
AAGATATATATTTAGCACCATTTGCACTTTTATTTTTGATATGGGACTCA
CTATATAGGTTTTTTTGATCTCAAATTTACAACCATGCTGCCCAGTCTCC
TATGTGNTGGAAATAGCACTATGCCAACATATATGGATTGTTGATACATT
TTTAACAAGTCAAAGCATTATTCCTTATTCTATTCAGACATGTCTACCAT
CACCTCAATTAATGTAGAACTATATAAAGAACTACTAGCACAACCTGGAA
ATTGTCCCGACACGAGCACCATACATAGTACATGCTCCTGCACCCTAGCA
TGCGTAGCTACCTTGTCACAACATGCATATGTCGTCTACTATGTCCCCCC
ACCCTGCCACCACACGTATATGACNCCACTATGTGAAGCTACCCCGCGCC
TCTACTTTCTTGCATTCAGCTCCCCCCCCCTGATCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_m14.b1 MSMg01no170_m14.b1 CHROMAT_FILE:
MSMg01no170_m14.b1 PHD_FILE: MSMg01no170_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:50 2005
         (148 letters)



>mm_chr15_39327108_39327655
          Length = 548

 Score =  230 bits (119), Expect = 3e-65
 Identities = 131/135 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgagcttatcattcatcattttgaaattatcaaaataaacctttattactttatttct 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 actgagcttatcattcatcattttgaaattagcaaaataaacctttattactttatttct 260

                                                                       
Query: 61  ggaataaaattagataggatgcaaactggcaggttcttaggtacatatatataagataaa 120
           |||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 ggaataaaaacagataggatgcaaactggcaggttcttaggtacatatacataagataaa 320

                          
Query: 121 aagattcatagaggc 135
           |||||||||||||||
Sbjct: 321 aagattcatagaggc 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space:    75600
Effective search space used:    75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no170_m14.g1 MSMg01no170_m14.g1 CHROMAT_FILE:
MSMg01no170_m14.g1 PHD_FILE: MSMg01no170_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:50 2005
         (282 letters)



>mm_chr15_39487907_39488588
          Length = 682

 Score =  545 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggcagagaggagcacagaagactcaggaaggtactttacgtggtgggagactaatttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tggcagagaggagcacagaagactcaggaaggtactttacgtggtgggagactaatttaa 423

                                                                       
Query: 61  ggcaaagagaattgacacatacagagatggaccacaatgatgaccaaatgattctacttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ggcaaagagaattgacacatacagagatggaccacaatgatgaccaaatgattctacttt 363

                                                                       
Query: 121 cacctggtaatgcagagaataatctgtgattattgaggaagcttcagttccattttatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cacctggtaatgcagagaataatctgtgattattgaggaagcttcagttccattttatta 303

                                                                       
Query: 181 gtcctatgttcaattgttttcaaaatatttctagtttcacataaagatatatatttagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtcctatgttcaattgttttcaaaatatttctagtttcacataaagatatatatttagca 243

                                                     
Query: 241 ccatttgcacttttatttttgatatgggactcactatatagg 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ccatttgcacttttatttttgatatgggactcactatatagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)