Query= MSMg01no172_a12.b1 MSMg01no172_a12.b1 CHROMAT_FILE:
MSMg01no172_a12.b1 PHD_FILE: MSMg01no172_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:24 2005
(316 letters)
>mm_chr15_63209417_63210132
Length = 716
Score = 402 bits (208), Expect = e-116
Identities = 268/312 (85%), Gaps = 39/312 (12%)
Strand = Plus / Plus
Query: 5 gaattctcacagtaactaccagtgattgagctt-aatgaagccttaatgaagaatgctgt 63
||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct: 242 gaattctcacagtaactaccagtgattgagcttgaa-gaggccttaatgaagaatgctgt 300
Query: 64 agccaatctagaaaatgtacacacacacacacacacacacacacacacacacacacacac 123
||||||||||||||||||| ||||||||||||||
Sbjct: 301 agccaatctagaaaatgtatacacacacacacac-------------------------- 334
Query: 124 acacacaccacgtttataaatgtagatatgaatgtagatatttactctacttagaaaata 183
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 -----------gtttataaatgtagatatgaatgtagatatttactctacttagaaaata 383
Query: 184 tttggatagtatctgaaagaaccaattatctaagaaaactaatgtacagttgaatcaagt 243
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 384 tttggatagtatctgaaagagccaattatctaagaaaactaatttacagttgaatcaagt 443
Query: 244 tggttgaacttgtctttaacatggtgctgacaatgtttaagttctgacttcattcacaaa 303
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggttgagcttgtctttaacatggtgctgacaatgtttaagttctgacttcattcacaaa 503
Query: 304 gtagatgatctt 315
||||||||||||
Sbjct: 504 gtagatgatctt 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no172_a12.g1 MSMg01no172_a12.g1 CHROMAT_FILE:
MSMg01no172_a12.g1 PHD_FILE: MSMg01no172_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:24 2005
(284 letters)
>mm_chr15_63347114_63347797
Length = 684
Score = 511 bits (264), Expect = e-149
Identities = 279/284 (98%)
Strand = Plus / Minus
Query: 1 agaaatttctgattcctttgggatgagaaaagcatcttggacagggtgccggaaatagat 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 484 agaaatttctgattcctttgggatgagaaaagcatcttggacagggtgatggaaatagat 425
Query: 61 gttactgagtaactttcaaagctgctagtcatggcagaaatagcattcctttgttgttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gttactgagtaactttcaaagctgctagtcatggcagaaatagcattcctttgttgttat 365
Query: 121 tttcagaagtatgaaaaaaagtggatttccaaatcctcatcaaacgaatcatcacaataa 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 364 tttcagaagtatgaaaaaaagtggatttctaaatcctcatcaaacgaatcatcacaataa 305
Query: 181 ttcacctatcctcccctactggtaaagcgatggttgttcatccattctgtgcctgatccc 240
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 304 ttcacctatcctcccctactggtaaagcgatggttgttcattcattctatgcctgatccc 245
Query: 241 agatgtgtccatctcagaagcatcatagatagcatcatgtccac 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agatgtgtccatctcagaagcatcatagatagcatcatgtccac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
