BAC Information

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BAC

Clone NameMSMg01-172G24
Chromosome15 (Build37)
Map Location 60,044,249 - 60,044,534
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665565, Sqle, E430025E21Rik, Nsmce2, Trib1, LOC665602, EG632248, LOC665613, 4933412E24Rik, LOC100040266
Downstream geneLOC623048, LOC211832, LOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172G24.T7 (MSMg01no172_g24.b1)MSMg01-172G24.TJ (MSMg01no172_g24.g1)
ACCAG368351AG368352
length770743
length of high quality
(start - end)
215 (38 - 252)287 (67 - 353)
definitionCHROMAT_FILE: MSMg01no172_g24.b1 PHD_FILE: MSMg01no172_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:54 2005CHROMAT_FILE: MSMg01no172_g24.g1 PHD_FILE: MSMg01no172_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGT
GAAAATGAAGGCACAGCATATGCAAACTTATGAGACACAATGGAAGCAGT
GCTAAGAGCAAAGTTCATAGCACTGTCTTCAATAACTTAAAAGTACACCT
GAAAGTTCTAAAGGAATGAAAAAAAACACAAGAGAGAAAGAGAAAGAAGA
GGAGGAGAAGGAGGAGAAGAAGGAGATATTGTTGTCNCNTAGTTTGCCTC
TTTCGATAGAAGAAACTTGATATCATTCCTTGTAACTATCAGGCCATTAT
ATATTACCGCTGGATTTTTTTTTTTTAACCCCAGAAAACTCAAAAACNCA
TGTTTTTAGGTGGCCTCGAAGACGAAAACCCCGTTTTTATTTTTTTGATT
TGTTNTTTTTNTTNNTTTAAAAATTTAAGNAAAAAATGTGGGGGGGGGGG
GTTTTTTTNTNNNNTTTTTTTTTTTTTTTTTGGTTGTTGTGTTTTGTTTG
TTTTTTTGTTTGTTATTGTGGTTGGTGTGGTTTTGTTTTTGTTTTTTTTT
TTTTTGTTGGTTTGTTGGTTTGTTGTTGGTGTGTTGTTTTTTTTTTTTAT
TTGGTTGTCTGCCGCGGTTTTTTATTTGTTTTATGAATTGGTTATTTTTT
ATTTTTTGTTAGTGGGTTTAATTTTTTTTTTTTTAATTAAGATTGGGATA
TTTTTTTTTTACGTTTATGGGACCCACTTCCTTTTCGCTTATTTTCTCAT
CATTCTCGTGCCTTCTTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATATGTGGCTTGCATTTATTTGTATTTGACAGC
ACTACTGTAGGATGTTTTTATTTCTGAGATAAAAATGCAAAACCCAAATT
TTGCATATACTACTTAAGAAGAAGCAACCCTCTTCTGCAGCTTCCTGTTA
CCAGCTAATGACTCTTGCTCAATGTGTGGCCACAGTGTAAAGTTGCAGGG
CCCCTTCAGACCCCTGTTGCTAGAGTAGGTGTGGGAAATCAGAGGCACTT
TCCTTGTGACAGGTGTATTCCAGAGAGAAAGCACTTGTGAGTGATTAGAG
GACTTGTTTGTTTCATAGCCTTGCAAGGCATTTATTGCTTGCCTGACTAA
AAAGTGGTGGAAATTATAGAATATAAAGAGCCTTTCCCTGTCAGGTGGTT
TTCAGAGTAGTGAGTATTCCTCAGGGCCACCCACATTATCTGTGTATATG
CCAATGACTAGGAAGGCAGGAAGGACAGATGGAAAAAAAAAAAAAACTTA
AAAACATCAGGAGCTCAAAGGTGCCAAGGCTTTGAAATGGTGCTGAGTAA
AAAGGCCGAGATGACTGCTTTTTTTTTTTCTTCCCCAGAATCTCTGAGCT
CTCAAAGAGATATGGAGATGACAGAGGGGGCTGCCTACAGAGTTGCATGC
ATATGCGTGTGTGCCTGTCTGTGCACGTGAAATGTTCAATTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_g24.g1 MSMg01no172_g24.g1 CHROMAT_FILE:
MSMg01no172_g24.g1 PHD_FILE: MSMg01no172_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:54 2005
         (287 letters)



>mm_chr15_60044049_60044734
          Length = 686

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%), Gaps = 1/287 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catatgtggcttgcatttatttgtatttgacagcactactgtaggatgtttttatttctg 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catatgtggcttccatttatttgtatttgacagcactactgtaggatgtttttatttctg 260

                                                                       
Query: 61  agataaaaatgcaaaacccaaattttgcatatactacttaagaagaagcaaccctcttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agataaaaatgcaaaacccaaattttgcatatactacttaagaagaagcaaccctcttct 320

                                                                       
Query: 121 gcagcttcctgttaccagctaatgactcttgctcaatgtgtggccacagtgtaaagttgc 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 gcagcttcctgttaccagctaatgactcttgc-caatgtgtggccacagtgtaaagttgc 379

                                                                       
Query: 181 agggccccttcagacccctgttgctagagtaggtgtgggaaatcagaggcactttccttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agggccccttcagacccctgttgctagagtaggtgtgggaaatcagaggcactttccttg 439

                                                          
Query: 241 tgacaggtgtattccagagagaaagcacttgtgagtgattagaggac 287
           ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 440 tgacaggtgtagtccagagagaaagcacttgtgagtgattagaggac 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 686
Length adjustment: 9
Effective length of query: 278
Effective length of database: 677
Effective search space:   188206
Effective search space used:   188206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)