Query= MSMg01no172_k10.b1 MSMg01no172_k10.b1 CHROMAT_FILE:
MSMg01no172_k10.b1 PHD_FILE: MSMg01no172_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:09 2005
(248 letters)
>mm_chr15_17329734_17330381
Length = 648
Score = 356 bits (184), Expect = e-103
Identities = 232/252 (92%), Gaps = 8/252 (3%)
Strand = Plus / Plus
Query: 1 atttttgatataaaacttggacctttttaggatgacaccat----ctgttttaatactga 56
||||||||| ||||||||||||||||||||||||||||||| | | |||| |||
Sbjct: 201 atttttgatgtaaaacttggacctttttaggatgacaccatcggccag----aatattga 256
Query: 57 gttaactgaagaaataaggaaagcaaaaaagaaactattgacagtgttggggtgtggaag 116
|||||||||||||||||||||||||||||| ||||||||| ||| |||||||| |||||
Sbjct: 257 gttaactgaagaaataaggaaagcaaaaaataaactattgtcagggttggggtatggaaa 316
Query: 117 gatactggagaggataatataagggtatcagttttctgtttgggaaaatggaataaaaga 176
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 317 gatactggataggataatataagggtatcagttttctgtttggggaaatggaataaaaga 376
Query: 177 gggctaggtatctcattattgtatgggaaggtaaataaagaaggagagtaaatactaagg 236
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 377 gggctaggtatctcattattgtatgggaaggcaaataaagaaggagagtaaatactaagg 436
Query: 237 acgcctgaaaac 248
| ||||||||||
Sbjct: 437 atgcctgaaaac 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no172_k10.g1 MSMg01no172_k10.g1 CHROMAT_FILE:
MSMg01no172_k10.g1 PHD_FILE: MSMg01no172_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:09 2005
(289 letters)
>mm_chr15_17373596_17374284
Length = 689
Score = 540 bits (279), Expect = e-158
Identities = 285/287 (99%)
Strand = Plus / Minus
Query: 1 cagagatcaaagcttcacgttatatctcataaataaatacaattattttcaaattaacaa 60
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 584 cagagatcaaagcttcacgttatatctaataaataaatacaattatttttaaattaacaa 525
Query: 61 taaaatttaattataatattaaggtaaaaatttatatgtgagaggaggattatgcagtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 taaaatttaattataatattaaggtaaaaatttatatgtgagaggaggattatgcagtcc 465
Query: 121 catgcaagtttcatatgtattacttctcaatcttttaagttaacaaataaatatgcttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 catgcaagtttcatatgtattacttctcaatcttttaagttaacaaataaatatgcttac 405
Query: 181 accttaaattatgtacatgactgatttaagattctccaatgttgaaaaatataacttctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 accttaaattatgtacatgactgatttaagattctccaatgttgaaaaatataacttctt 345
Query: 241 cttcaaatgccttctaagtataacctcaatcaatagtttggttacaa 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cttcaaatgccttctaagtataacctcaatcaatagtttggttacaa 298
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
